当前解析结果
SmilChr02G001393| 统一新 Gene ID | SmilChr02G001393 |
|---|---|
| 名称 | SmilChr02G001393 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26466817 - 26470187 / + |
| NCBI Gene ID | LOC131007634 |
|---|---|
| GeneID | 131007634 |
| locus_tag | - |
| NCBI Name | LOC131007634 |
| 原始查询 | SmilChr02G001393 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=51.8; qcov=0.985; evalue=0; confidence=high |
| Rice | Os03g0556600- identity=46.5; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007634 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790526.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790526.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790526.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790526.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26467132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B125,B54,C15,C74 |
Chr2:26467135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B36,C7 |
Chr2:26467435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C50 |
Chr2:26467438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:26467465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:26467589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B137,D4 |
Chr2:26467647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:26467687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:26467763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C64,C66,C74 |
Chr2:26467918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:26468136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:26468739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790526.1PF01453
B_lectin 74-177 aa
PF00954
S_locus_glycop 209-317 aa
PF08276
PAN_2 339-405 aa
PF00069
Pkinase 504-702 aa
PF07714
PK_Tyr_Ser-Thr 505-770 aa
PF11883
DUF3403 775-819 aa
XP_057790527.1PF01453
B_lectin 21-84 aa
PF00954
S_locus_glycop 116-224 aa
PF08276
PAN_2 246-312 aa
PF00069
Pkinase 411-609 aa
PF07714
PK_Tyr_Ser-Thr 412-677 aa
PF11883
DUF3403 682-726 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790526.1 |
Pfam | PF01453 |
B_lectin | Repeat | 74 | 177 | 1.7e-35 | 122.3 | D-mannose binding lectin |
XP_057790526.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 209 | 317 | 2e-28 | 99.9 | S-locus glycoprotein domain |
XP_057790526.1 |
Pfam | PF08276 |
PAN_2 | Domain | 339 | 405 | 1.5e-18 | 67.3 | PAN-like domain |
XP_057790526.1 |
Pfam | PF00069 |
Pkinase | Domain | 504 | 702 | 4.4e-43 | 148.3 | Protein kinase domain |
XP_057790526.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 505 | 770 | 1.1e-46 | 160.0 | Protein tyrosine and serine/threonine kinase |
XP_057790526.1 |
Pfam | PF11883 |
DUF3403 | Family | 775 | 819 | 3.8e-08 | 34.0 | Domain of unknown function (DUF3403) |
XP_057790527.1 |
Pfam | PF01453 |
B_lectin | Repeat | 21 | 84 | 1.7e-19 | 70.9 | D-mannose binding lectin |
XP_057790527.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 116 | 224 | 1.7e-28 | 100.1 | S-locus glycoprotein domain |
XP_057790527.1 |
Pfam | PF08276 |
PAN_2 | Domain | 246 | 312 | 1.3e-18 | 67.5 | PAN-like domain |
XP_057790527.1 |
Pfam | PF00069 |
Pkinase | Domain | 411 | 609 | 3.5e-43 | 148.6 | Protein kinase domain |
XP_057790527.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 412 | 677 | 8.2e-47 | 160.4 | Protein tyrosine and serine/threonine kinase |
XP_057790527.1 |
Pfam | PF11883 |
DUF3403 | Family | 682 | 726 | 3.4e-08 | 34.2 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。