Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001402`

染色体: Chr02 坐标: 26610695-26614264 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001402`
名称	SmilChr02G001402
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	26610695 - 26614264 / `+`

ID 对照

NCBI Gene ID	`LOC131007636`
GeneID	`131007636`
locus_tag	`-`
NCBI Name	`LOC131007636`
原始查询	`SmilChr02G001402`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=51.2; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0784700` - identity=45.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403)
InterPro	-
eggNOG	-
NR	GeneID:131007636

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790528.1`
2	Nucleus	细胞核	0.00000	`XP_057790528.1`
3	Chromosome	染色体	0.00000	`XP_057790528.1`
4	Centromere	着丝粒	0.00000	`XP_057790528.1`
5	Chromatin	染色质	0.00000	`XP_057790528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:26611026`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B59
`Chr2:26611026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:26611148`	`G`	`GC`	1bp_insertion	frameshift_variant	15	A15,A4,B122,B35,B45,B57,B86,B90,B92,C12,C64,C66,C74,C75,C81
`Chr2:26611152`	`C`	`CA`	1bp_insertion	frameshift_variant	92	A1,A16,A18,A23,A24,A3,B1,B100,B102,B106,B108,B109,B112,B115,B117,B12,B121,B125,B127,B13,B133,B135,B136,B139,B14,B140,B15,B19,B2,B23,B26,B29,B3,B32,B40,B42,B43,B48,B55,B56,B59,B64,B7,B70,B71,B75,B76,B77,B82,B87,B89,B94,B95,B96,B97,B98,C1,C11,C14,C2,C21,C23,C24,C28,C32,C33,C34,C36,C4,C40,C42,C45,C49,C50,C55,C57,C58,C62,C68,C69,C71,C72,C77,C79,C80,C82,C84,C85,C86,D2,D3,D8
`Chr2:26611154`	`C`	`CTT`	2bp_insertion	frameshift_variant	92	A1,A16,A18,A23,A24,A3,B1,B100,B102,B106,B108,B109,B112,B115,B117,B12,B121,B125,B127,B13,B133,B135,B136,B139,B14,B140,B15,B19,B2,B23,B26,B29,B3,B32,B40,B42,B43,B48,B55,B56,B59,B64,B7,B70,B71,B75,B76,B77,B82,B87,B89,B94,B95,B96,B97,B98,C1,C11,C14,C2,C21,C23,C24,C28,C32,C33,C34,C36,C4,C40,C42,C45,C49,C50,C55,C57,C58,C62,C68,C69,C71,C72,C77,C79,C80,C82,C84,C85,C86,D2,D3,D8
`Chr2:26611194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:26611232`	`G`	`A`	EMS_canonical_SNV	stop_gained	36	A10,A19,A4,B103,B104,B118,B132,B16,B18,B23,B30,B36,B4,B48,B62,B67,B78,B88,B99,C16,C19,C24,C27,C34,C44,C53,C56,C59,C64,C66,C70,C81,D1,D2,D6,D7
`Chr2:26611885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,D3
`Chr2:26611912`	`GTA`	`G`	2bp_deletion	frameshift_variant	3	A5,B137,D4
`Chr2:26611912`	`GTA`	`G`	2bp_deletion	CDS_variant	3	A5,B137,D4
`Chr2:26611915`	`A`	`AGG`	2bp_insertion	frameshift_variant	3	A5,B137,D4
`Chr2:26611915`	`A`	`AGG`	2bp_insertion	CDS_variant	3	A5,B137,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790528.1

811 aa

406

811

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

DUF3403

PF01453 B_lectin 76-179 aa PF00954 S_locus_glycop 212-320 aa PF08276 PAN_2 342-408 aa PF00069 Pkinase 495-694 aa PF07714 PK_Tyr_Ser-Thr 497-762 aa PF11883 DUF3403 766-811 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790528.1`	Pfam	`PF01453`	B_lectin	Repeat	76	179	1.5e-34	119.4	D-mannose binding lectin
`XP_057790528.1`	Pfam	`PF00954`	S_locus_glycop	Domain	212	320	5e-27	95.3	S-locus glycoprotein domain
`XP_057790528.1`	Pfam	`PF08276`	PAN_2	Domain	342	408	4.3e-20	72.3	PAN-like domain
`XP_057790528.1`	Pfam	`PF00069`	Pkinase	Domain	495	694	9e-43	147.3	Protein kinase domain
`XP_057790528.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	497	762	1.2e-47	163.1	Protein tyrosine and serine/threonine kinase
`XP_057790528.1`	Pfam	`PF11883`	DUF3403	Family	766	811	3.3e-10	40.6	Domain of unknown function (DUF3403)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934545.1
AAAAGAATTGTGCATTCACGACGAGCCATTAGTCTATTAATTGGCAACAACAAAACAGACCTTCTCCTTTGTTAGTTGTGAGCAATCCAGAAATAATGAATATGATACGCAGCAGTAGATTCTATCTCTGCCTATTCCTATTCACAACTTGGTTTTTCTCAGCTCACACAACAGATACCATTGATACTTCCCAAATATTGAGCGATAACCGTGATGACACTCTCATCTCATCCAGCGGCGTCTTTGCGTTGGGGTTTTTC...

CDS

1 records

下载 CDS FASTA

LOC131007636
ATGAATATGATACGCAGCAGTAGATTCTATCTCTGCCTATTCCTATTCACAACTTGGTTTTTCTCAGCTCACACAACAGATACCATTGATACTTCCCAAATATTGAGCGATAACCGTGATGACACTCTCATCTCATCCAGCGGCGTCTTTGCGTTGGGGTTTTTCAGCCCAGGGAGCTCCAAGAATCGGTACGTCGGCATATGGTACAACAACATTAAAGACAAGACTGTGGTGTGGATCGCCAACAGAGACCATCCACT...

Protein

1 records

下载 Protein FASTA

XP_057790528.1
MNMIRSSRFYLCLFLFTTWFFSAHTTDTIDTSQILSDNRDDTLISSSGVFALGFFSPGSSKNRYVGIWYNNIKDKTVVWIANRDHPLTDRSGTLRLIEPGGRLLLLNATNATIWAANVSRSAHTPLARLLDSGNLVVTDANDEKNIIWESFDYPTDTFLPGMKLGKNLVTGHEVFITSKTNNDEPAMGGITYHCDPSGYPQNVIKEGASFRYKTGPWNGVTFSGSHNLVKNDIFTYGVVISENEVYYHYELINTSLYMRF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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