当前解析结果
SmilChr02G001403| 统一新 Gene ID | SmilChr02G001403 |
|---|---|
| 名称 | SmilChr02G001403 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26617680 - 26620835 / + |
| NCBI Gene ID | LOC131007637 |
|---|---|
| GeneID | 131007637 |
| locus_tag | - |
| NCBI Name | LOC131007637 |
| 原始查询 | SmilChr02G001403 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27300 (AT4G27300)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828838] identity=51.3; qcov=1.01; evalue=1.19e-41; confidence=medium |
| Rice | Os01g0784700- identity=51; qcov=1.01; evalue=6.16e-42; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007637 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790529.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057790531.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790529.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790529.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790529.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26617841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:26617868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:26618003 |
G |
A |
EMS_canonical_SNV | stop_gained | 67 | A1,A13,A15,A16,A23,A24,B1,B100,B102,B106,B108,B109,B111,B112,B115,B117,B125,B13,B133,B135,B136,B139,B14,B140,B2,B26,B3,B40,B48,B55,B56,B59,B62,B64,B7,B70,B75,B76,B77,B82,B95,B96,B98,C14,C2,C21,C23,C24,C28,C32,C33,C34,C4,C40,C45,C49,C50,C55,C57,C68,C72,C77,C82,C85,C86,D3,D8 |
Chr2:26618064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,C35,C55 |
Chr2:26618068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B91,C22,C3 |
Chr2:26618119 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | A22,B6,C63,D11 |
Chr2:26618119 |
GT |
G |
1bp_deletion | CDS_variant | 4 | A22,B6,C63,D11 |
Chr2:26618215 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A7,B122,B35,B86,C64,C66,C74,C75,C81 |
Chr2:26618326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:26618421 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A9,B106,B76,B82,C28,C42,C70,C79,C85 |
Chr2:26618429 |
T |
TC |
1bp_insertion | frameshift_variant | 19 | A4,A6,B103,B127,B21,B46,B49,B62,B71,B91,C19,C24,C28,C48,C54,C55,C6,C62,C7 |
Chr2:26618430 |
T |
TG |
1bp_insertion | frameshift_variant | 18 | A4,A6,B103,B127,B21,B46,B49,B62,B71,B91,C19,C24,C28,C48,C54,C55,C6,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790529.1PF01453
B_lectin 76-181 aa
PF00954
S_locus_glycop 219-272 aa
PF08276
PAN_2 290-356 aa
PF07714
PK_Tyr_Ser-Thr 444-642 aa
PF00069
Pkinase 444-643 aa
PF11883
DUF3403 714-759 aa
XP_057790530.1PF01453
B_lectin 76-181 aa
PF00954
S_locus_glycop 219-272 aa
PF08276
PAN_2 290-356 aa
PF07714
PK_Tyr_Ser-Thr 444-598 aa
PF00069
Pkinase 444-611 aa
XP_057790531.1PF07714
PK_Tyr_Ser-Thr 15-213 aa
PF00069
Pkinase 15-215 aa
PF11883
DUF3403 285-330 aa
XP_057790532.1PF07714
PK_Tyr_Ser-Thr 1-33 aa
PF11883
DUF3403 104-149 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790529.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 181 | 3.9e-34 | 118.0 | D-mannose binding lectin |
XP_057790529.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 219 | 272 | 2.9e-10 | 41.4 | S-locus glycoprotein domain |
XP_057790529.1 |
Pfam | PF08276 |
PAN_2 | Domain | 290 | 356 | 4.9e-18 | 65.7 | PAN-like domain |
XP_057790529.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 444 | 642 | 7.1e-45 | 154.0 | Protein tyrosine and serine/threonine kinase |
XP_057790529.1 |
Pfam | PF00069 |
Pkinase | Domain | 444 | 643 | 2e-41 | 142.9 | Protein kinase domain |
XP_057790529.1 |
Pfam | PF11883 |
DUF3403 | Family | 714 | 759 | 2.5e-07 | 31.4 | Domain of unknown function (DUF3403) |
XP_057790530.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 181 | 1.5e-34 | 119.3 | D-mannose binding lectin |
XP_057790530.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 219 | 272 | 1.9e-10 | 41.9 | S-locus glycoprotein domain |
XP_057790530.1 |
Pfam | PF08276 |
PAN_2 | Domain | 290 | 356 | 3.8e-18 | 66.1 | PAN-like domain |
XP_057790530.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 444 | 598 | 1.5e-32 | 113.6 | Protein tyrosine and serine/threonine kinase |
XP_057790530.1 |
Pfam | PF00069 |
Pkinase | Domain | 444 | 611 | 6.1e-32 | 111.8 | Protein kinase domain |
XP_057790531.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 15 | 213 | 1.2e-45 | 156.6 | Protein tyrosine and serine/threonine kinase |
XP_057790531.1 |
Pfam | PF00069 |
Pkinase | Domain | 15 | 215 | 3e-42 | 145.5 | Protein kinase domain |
XP_057790531.1 |
Pfam | PF11883 |
DUF3403 | Family | 285 | 330 | 1e-07 | 32.7 | Domain of unknown function (DUF3403) |
XP_057790532.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 1 | 33 | 3.8e-06 | 27.1 | Protein tyrosine and serine/threonine kinase |
XP_057790532.1 |
Pfam | PF11883 |
DUF3403 | Family | 104 | 149 | 2.8e-08 | 34.4 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。