当前解析结果
SmilChr02G001407| 统一新 Gene ID | SmilChr02G001407 |
|---|---|
| 名称 | SmilChr02G001407 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26706180 - 26709397 / + |
| NCBI Gene ID | LOC131008201 |
|---|---|
| GeneID | 131008201 |
| locus_tag | - |
| NCBI Name | LOC131008201 |
| 原始查询 | SmilChr02G001407 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=50.4; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0556600- identity=44.4; qcov=1.05; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008201 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057791076.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057791076.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791076.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791076.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791076.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26706233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:26706302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr2:26706371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B126,B5,C49,C80 |
Chr2:26706461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B28,C69 |
Chr2:26706500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:26706558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:26706621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B11,B78,B84,C12 |
Chr2:26706647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B78 |
Chr2:26706770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:26707065 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | B125,D11 |
Chr2:26707065 |
AGT |
A |
2bp_deletion | CDS_variant | 2 | B125,D11 |
Chr2:26707078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791076.1PF01453
B_lectin 76-181 aa
PF00954
S_locus_glycop 214-321 aa
PF08276
PAN_2 343-409 aa
PF00069
Pkinase 509-777 aa
PF07714
PK_Tyr_Ser-Thr 511-779 aa
PF11883
DUF3403 782-827 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791076.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 181 | 1.1e-35 | 123.0 | D-mannose binding lectin |
XP_057791076.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 214 | 321 | 9.3e-27 | 94.5 | S-locus glycoprotein domain |
XP_057791076.1 |
Pfam | PF08276 |
PAN_2 | Domain | 343 | 409 | 8e-19 | 68.2 | PAN-like domain |
XP_057791076.1 |
Pfam | PF00069 |
Pkinase | Domain | 509 | 777 | 5.2e-46 | 157.9 | Protein kinase domain |
XP_057791076.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 511 | 779 | 1.4e-48 | 166.2 | Protein tyrosine and serine/threonine kinase |
XP_057791076.1 |
Pfam | PF11883 |
DUF3403 | Family | 782 | 827 | 2.9e-08 | 34.4 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。