Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001411`

染色体: Chr02 坐标: 26749155-26752912 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001411`
名称	SmilChr02G001411
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	26749155 - 26752912 / `+`

ID 对照

NCBI Gene ID	`LOC131007650`
GeneID	`131007650`
locus_tag	`-`
NCBI Name	`LOC131007650`
原始查询	`SmilChr02G001411`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=53.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0556600` - identity=45.1; qcov=1.07; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403)
InterPro	-
eggNOG	-
NR	GeneID:131007650

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790545.1`
2	Nucleus	细胞核	0.00000	`XP_057790545.1`
3	Chromosome	染色体	0.00000	`XP_057790545.1`
4	Centromere	着丝粒	0.00000	`XP_057790545.1`
5	Chromatin	染色质	0.00000	`XP_057790545.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:26749218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr2:26749240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B78
`Chr2:26749265`	`C`	`CG`	1bp_insertion	frameshift_variant	2	A11,B78
`Chr2:26749265`	`C`	`CG`	1bp_insertion	CDS_variant	2	A11,B78
`Chr2:26749338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr2:26749362`	`TC`	`T`	1bp_deletion	frameshift_variant	134	A10,A11,A15,A16,A19,A3,A4,A6,A8,B1,B10,B102,B103,B105,B106,B107,B11,B110,B111,B112,B114,B118,B12,B121,B127,B131,B132,B134,B139,B140,B15,B16,B18,B19,B23,B25,B28,B29,B3,B30,B31,B34,B36,B38,B39,B4,B42,B43,B45,B48,B50,B52,B53,B54,B57,B58,B60,B62,B63,B66,B67,B68,B71,B72,B73,B74,B78,B81,B82,B83,B84,B86,B88,B9,B90,B92,B94,B95,B97,B99,C10,C11,C12,C13,C14,C15,C16,C17,C19,C24,C26,C27,C28,C29,C30,C34,C35,C36,C41,C42,C43,C44,C46,C48,C5,C52,C53,C54,C56,C58,C59,C6,C62,C64,C66,C69,C70,C71,C72,C75,C79,C80,C81,C84,C85,C87,D1,D10,D2,D5,D6,D7,D8,D9
`Chr2:26749405`	`TCG`	`T`	2bp_deletion	frameshift_variant	134	A1,A10,A11,A14,A16,A18,A19,A2,A20,A23,A3,A4,A7,A9,B101,B103,B105,B11,B111,B114,B117,B118,B12,B122,B124,B127,B132,B134,B135,B137,B138,B139,B16,B18,B2,B20,B23,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B4,B40,B42,B43,B45,B46,B48,B49,B5,B53,B54,B58,B59,B64,B65,B66,B67,B69,B7,B71,B72,B74,B78,B79,B83,B84,B86,B88,B89,B90,B92,B93,B94,B99,C12,C16,C17,C19,C20,C21,C24,C27,C29,C3,C30,C32,C34,C36,C37,C43,C44,C46,C47,C48,C49,C5,C52,C53,C56,C59,C6,C60,C61,C62,C64,C66,C68,C7,C70,C73,C74,C75,C78,C79,C8,C81,C82,C83,C85,C9,D1,D11,D2,D5,D6,D7,D8
`Chr2:26749530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,C32,C68,C85
`Chr2:26749544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:26749622`	`C`	`T`	EMS_canonical_SNV	stop_gained	70	A11,A13,A14,A18,A21,A22,A24,A25,A5,B101,B104,B108,B113,B123,B126,B128,B130,B136,B17,B27,B28,B30,B36,B37,B38,B39,B4,B42,B43,B44,B47,B5,B50,B51,B52,B58,B6,B62,B65,B70,B78,B80,B85,C1,C11,C17,C18,C23,C25,C3,C31,C37,C39,C44,C48,C50,C52,C56,C60,C61,C63,C65,C67,C69,C73,C80,C83,C86,C9,D11
`Chr2:26749843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr2:26749853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790545.1

884 aa

442

884

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

DUF3403

PF01453 B_lectin 134-239 aa PF00954 S_locus_glycop 271-379 aa PF08276 PAN_2 401-467 aa PF00069 Pkinase 568-834 aa PF07714 PK_Tyr_Ser-Thr 568-836 aa PF11883 DUF3403 839-884 aa

XP_057790546.1

884 aa

442

884

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

DUF3403

PF01453 B_lectin 134-239 aa PF00954 S_locus_glycop 271-379 aa PF08276 PAN_2 401-467 aa PF00069 Pkinase 568-834 aa PF07714 PK_Tyr_Ser-Thr 568-836 aa PF11883 DUF3403 839-884 aa

XP_057790547.1

731 aa

366

731

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

DUF3403

PF01453 B_lectin 26-86 aa PF00954 S_locus_glycop 118-226 aa PF08276 PAN_2 248-314 aa PF00069 Pkinase 415-681 aa PF07714 PK_Tyr_Ser-Thr 415-683 aa PF11883 DUF3403 686-731 aa

XP_057790548.1

664 aa

332

664

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

DUF3403

PF00954 S_locus_glycop 51-159 aa PF08276 PAN_2 181-247 aa PF00069 Pkinase 348-614 aa PF07714 PK_Tyr_Ser-Thr 348-616 aa PF11883 DUF3403 619-664 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790545.1`	Pfam	`PF01453`	B_lectin	Repeat	134	239	1.9e-36	125.4	D-mannose binding lectin
`XP_057790545.1`	Pfam	`PF00954`	S_locus_glycop	Domain	271	379	3.1e-24	86.3	S-locus glycoprotein domain
`XP_057790545.1`	Pfam	`PF08276`	PAN_2	Domain	401	467	1.8e-19	70.3	PAN-like domain
`XP_057790545.1`	Pfam	`PF00069`	Pkinase	Domain	568	834	1.5e-44	153.1	Protein kinase domain
`XP_057790545.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	568	836	1.3e-47	163.0	Protein tyrosine and serine/threonine kinase
`XP_057790545.1`	Pfam	`PF11883`	DUF3403	Family	839	884	3.3e-07	31.0	Domain of unknown function (DUF3403)
`XP_057790546.1`	Pfam	`PF01453`	B_lectin	Repeat	134	239	1.9e-36	125.4	D-mannose binding lectin
`XP_057790546.1`	Pfam	`PF00954`	S_locus_glycop	Domain	271	379	3.1e-24	86.3	S-locus glycoprotein domain
`XP_057790546.1`	Pfam	`PF08276`	PAN_2	Domain	401	467	1.8e-19	70.3	PAN-like domain
`XP_057790546.1`	Pfam	`PF00069`	Pkinase	Domain	568	834	1.5e-44	153.1	Protein kinase domain
`XP_057790546.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	568	836	1.3e-47	163.0	Protein tyrosine and serine/threonine kinase
`XP_057790546.1`	Pfam	`PF11883`	DUF3403	Family	839	884	3.3e-07	31.0	Domain of unknown function (DUF3403)
`XP_057790547.1`	Pfam	`PF01453`	B_lectin	Repeat	26	86	1.3e-19	71.2	D-mannose binding lectin
`XP_057790547.1`	Pfam	`PF00954`	S_locus_glycop	Domain	118	226	2.4e-24	86.7	S-locus glycoprotein domain
`XP_057790547.1`	Pfam	`PF08276`	PAN_2	Domain	248	314	1.4e-19	70.7	PAN-like domain
`XP_057790547.1`	Pfam	`PF00069`	Pkinase	Domain	415	681	1.1e-44	153.5	Protein kinase domain
`XP_057790547.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	415	683	8.8e-48	163.6	Protein tyrosine and serine/threonine kinase
`XP_057790547.1`	Pfam	`PF11883`	DUF3403	Family	686	731	2.7e-07	31.3	Domain of unknown function (DUF3403)
`XP_057790548.1`	Pfam	`PF00954`	S_locus_glycop	Domain	51	159	2.1e-24	86.9	S-locus glycoprotein domain
`XP_057790548.1`	Pfam	`PF08276`	PAN_2	Domain	181	247	1.2e-19	70.9	PAN-like domain
`XP_057790548.1`	Pfam	`PF00069`	Pkinase	Domain	348	614	9.1e-45	153.8	Protein kinase domain
`XP_057790548.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	348	616	7.1e-48	163.9	Protein tyrosine and serine/threonine kinase
`XP_057790548.1`	Pfam	`PF11883`	DUF3403	Family	619	664	2.3e-07	31.5	Domain of unknown function (DUF3403)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057934562.1
CTCAACAAAAAGACTTGGATAATAATGGTGTCCTACTAACCGAATTCCATGTCAAGCACATTAGCCGTAAATGCAGTAGTTGGTGGTCATAAATTATCCGTGCATCGCTGCAAAAGAGGAAAAACAGATCTACTCGAGTTGACGACCACCGCCGGAAACAGAAAAATAACGAGTTTGACATCCGCGTTCAACTCGCTTAATTCTTCTTCCTGCTATGCAGCAGATACAAGAATGAATAATATCATACACATCGTGTTTTA...

XM_057934563.1
CTCAACAAAAAGACTTGGATAATAATGGTGTCCTACTAACCGAATTCCATGTCAAGCACATTAGCCGTAAATGCAGTAGTTGGTGGTCATAAATTATCCGTGCATCGCTGCAAAAGAGGAAAAACAGATCTACTCGAGTTGACGACCACCGCCGGAAACAGAAAAATAACGAGTTTGACATCCGCGTTCAACTCGCTTAATTCTTCTTCCTGCTATGCAGCAGATACAAGAATGAATAATATCATACACATCGTGTTTTA...

CDS

4 records

下载 CDS FASTA

LOC131007650
ATGTCAAGCACATTAGCCGTAAATGCAGTAGTTGGTGGTCATAAATTATCCGTGCATCGCTGCAAAAGAGGAAAAACAGATCTACTCGAGTTGACGACCACCGCCGGAAACAGAAAAATAACGAGTTTGACATCCGCGTTCAACTCGCTTAATTCTTCTTCCTGCTATGCAGCAGATACAAGAATGAATAATATCATACACATCGTGTTTTACTACTCTCTTCTTATTATCATCAACACTCTCCTCACCACTAACGCAAT...

Protein

4 records

下载 Protein FASTA

XP_057790545.1
MSSTLAVNAVVGGHKLSVHRCKRGKTDLLELTTTAGNRKITSLTSAFNSLNSSSCYAADTRMNNIIHIVFYYSLLIIINTLLTTNAIDTINTSHALRHSTLISSGGTFELGFFNPGESNRWYVGIWYKRITPKTVVWVANRDKPLPDTSGTLTVIAPGRLLLLNAANATVWSTNTSVSLQTRAPVAQLLDSGNLVVRDANDGLNIVWQSFDFPTDTLLPGMKLGWNYVTGREAYLTSAKNGGDPASGDFTFHCDPTGYPQ...

XP_057790546.1
MSSTLAVNAVVGGHKLSVHRCKRGKTDLLELTTTAGNRKITSLTSAFNSLNSSSCYAADTRMNNIIHIVFYYSLLIIINTLLTTNAIDTINTSHALRHSTLISSGGTFELGFFNPGESNRWYVGIWYKRITPKTVVWVANRDKPLPDTSGTLTVIAPGRLLLLNAANATVWSTNTSVSLQTRAPVAQLLDSGNLVVRDANDGLNIVWQSFDFPTDTLLPGMKLGWNYVTGREAYLTSAKNGGDPASGDFTFHCDPTGYPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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