Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001414

染色体: Chr02 坐标: 26763248-26763834 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001414
名称SmilChr02G001414
描述G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向26763248 - 26763834 / -

ID 对照

NCBI Gene IDLOC131007708
GeneID131007708
locus_tag-
NCBI NameLOC131007708
原始查询SmilChr02G001414

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
ArabidopsisAT1G61500 (AT1G61500)
S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842444]
identity=66.3; qcov=0.941; evalue=1.82e-41; confidence=medium
RiceOs07g0550500
-
identity=69.5; qcov=0.941; evalue=1.24e-44; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131007708

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057790626.1
2 Cytoplasm 细胞质 0.60000 XP_057790626.1
3 Cell membrane 细胞膜 0.60000 XP_057790626.1
4 Membrane raft 膜筏 0.20000 XP_057790626.1
5 Nucleus 细胞核 0.00000 XP_057790626.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:26763359 G GGA 2bp_insertion frameshift_variant 76 A1,A18,A2,A20,A6,A7,A8,A9,B10,B103,B106,B110,B117,B122,B124,B126,B132,B137,B19,B20,B25,B32,B33,B34,B37,B41,B45,B46,B50,B52,B53,B54,B59,B60,B63,B65,B7,B71,B72,B73,B79,B81,B83,B84,B86,B89,B9,B94,B99,C10,C16,C26,C27,C28,C35,C36,C37,C41,C47,C48,C50,C53,C6,C60,C61,C64,C66,C74,C75,C8,C82,C83,C87,C9,D11,D3
Chr2:26763376 C T EMS_canonical_SNV CDS_variant 2 B107,B40
Chr2:26763433 G GAT 2bp_insertion frameshift_variant 1 D10
Chr2:26763433 G GAT 2bp_insertion CDS_variant 1 D10
Chr2:26763435 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:26763436 TGC T 2bp_deletion frameshift_variant 1 D10
Chr2:26763436 TGC T 2bp_deletion CDS_variant 1 D10
Chr2:26763437 G A EMS_canonical_SNV CDS_variant 1 A23
Chr2:26763560 C T EMS_canonical_SNV CDS_variant 1 B69
Chr2:26763590 C T EMS_canonical_SNV CDS_variant 1 A13
Chr2:26763690 G GA 1bp_insertion frameshift_variant 2 B129,B91
Chr2:26763690 G GA 1bp_insertion CDS_variant 2 B129,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790626.1
101 aa
N
1
50
101
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 3-95 aa PF07714 PK_Tyr_Ser-Thr 5-96 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790626.1 Pfam PF00069 Pkinase Domain 3 95 1.2e-09 38.7 Protein kinase domain
XP_057790626.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 5 96 1.8e-16 61.0 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057934643.1
TCGGTCCTGTTTACAAGGTAATGTAGTAAGTGAGAGTGCTGGAAGTTGAAAAATTGCAATACTTTGACATCCTTACTAATAGTTATAAGCAGGGGAACATGCCATCAGGAGAAGAAATAGCCGTCAAAAGATTGTCGAGATTTTCACAACAGGGTCTTGAAAAGTTCAAAAACGAAGTAATGCTGATTGCAAAACTTCAGCATAGAAACCTCGTAAGACTTTTGGGATGTTGCATTCAAGAAGAGGAAAGGATGTTAATC...

CDS

1 records

下载 CDS FASTA
LOC131007708
ATGCCATCAGGAGAAGAAATAGCCGTCAAAAGATTGTCGAGATTTTCACAACAGGGTCTTGAAAAGTTCAAAAACGAAGTAATGCTGATTGCAAAACTTCAGCATAGAAACCTCGTAAGACTTTTGGGATGTTGCATTCAAGAAGAGGAAAGGATGTTAATCTATGAATATCTACAGAACAAAAGTCTTGATCTTTTTGTTTTTGATCGCAGTCGAAGAACACAGTTGACATGGCCTAAGCGTTATGATATTATGATGGG...

Protein

1 records

下载 Protein FASTA
XP_057790626.1
MPSGEEIAVKRLSRFSQQGLEKFKNEVMLIAKLQHRNLVRLLGCCIQEEERMLIYEYLQNKSLDLFVFDRSRRTQLTWPKRYDIMMGIARGLLYLSITIPD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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