Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001416`

染色体: Chr02 坐标: 26779584-26783271 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001416`
名称	SmilChr02G001416
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	26779584 - 26783271 / `-`

ID 对照

NCBI Gene ID	`LOC131007668`
GeneID	`131007668`
locus_tag	`-`
NCBI Name	`LOC131007668`
原始查询	`SmilChr02G001416`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=45.1; qcov=0.999; evalue=0; confidence=high
Rice	`Os03g0556600` - identity=40.1; qcov=1.07; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790582.1`
2	Nucleus	细胞核	0.00000	`XP_057790582.1`
3	Chromosome	染色体	0.00000	`XP_057790582.1`
4	Centromere	着丝粒	0.00000	`XP_057790582.1`
5	Chromatin	染色质	0.00000	`XP_057790582.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:26779927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B16,B34,D3
`Chr2:26780012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:26780117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr2:26780129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr2:26780149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:26780727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:26780742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B93
`Chr2:26781023`	`G`	`GGT`	2bp_insertion	frameshift_variant	22	A6,B114,B119,B120,B123,B128,B134,B21,B27,B49,B60,B61,B64,B73,B79,B8,C15,C31,C4,C55,C63,D9
`Chr2:26781039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B43
`Chr2:26781232`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B137,D4
`Chr2:26781448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:26781451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790582.1

814 aa

407

814

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-176 aa PF00954 S_locus_glycop 208-316 aa PF08276 PAN_2 337-403 aa PF00069 Pkinase 498-696 aa PF07714 PK_Tyr_Ser-Thr 498-767 aa

XP_057790583.1

813 aa

406

813

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-176 aa PF00954 S_locus_glycop 208-316 aa PF08276 PAN_2 337-403 aa PF00069 Pkinase 497-695 aa PF07714 PK_Tyr_Ser-Thr 497-766 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790582.1`	Pfam	`PF01453`	B_lectin	Repeat	77	176	7.5e-30	104.2	D-mannose binding lectin
`XP_057790582.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	1.3e-18	68.2	S-locus glycoprotein domain
`XP_057790582.1`	Pfam	`PF08276`	PAN_2	Domain	337	403	4e-19	69.2	PAN-like domain
`XP_057790582.1`	Pfam	`PF00069`	Pkinase	Domain	498	696	3.1e-45	155.4	Protein kinase domain
`XP_057790582.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	498	767	1.8e-47	162.5	Protein tyrosine and serine/threonine kinase
`XP_057790583.1`	Pfam	`PF01453`	B_lectin	Repeat	77	176	1.2e-29	103.5	D-mannose binding lectin
`XP_057790583.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	1.3e-18	68.2	S-locus glycoprotein domain
`XP_057790583.1`	Pfam	`PF08276`	PAN_2	Domain	337	403	4e-19	69.2	PAN-like domain
`XP_057790583.1`	Pfam	`PF00069`	Pkinase	Domain	497	695	3.1e-45	155.3	Protein kinase domain
`XP_057790583.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	497	766	1.8e-47	162.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934600.1
GTCATATTGTTTACTTTTTTGCGGTATTGTTCTTCAACCAAGAGTGATCAGCACATTTGAATATGGCGCTCTTCTTTTTCACTACAATCCTCTGCTCCCTGCTTCACTCCATCCCCTTTCTGAGTTTAACAGTTGGAGCAGTTGACGACTGCACTCTTTTTCCAAATCAAACCCTTGTTGTGGGGCAGAATTTGATATCTCCAAACCAAGTTTTTGAAATGGGTTTTTTCTCGGCAGGAAAATCTTCAAATAGATTCATG...

XM_057934599.1
GTCATATTGTTTACTTTTTTGCGGTATTGTTCTTCAACCAAGAGTGATCAGCACATTTGAATATGGCGCTCTTCTTTTTCACTACAATCCTCTGCTCCCTGCTTCACTCCATCCCCTTTCTGAGTTTAACAGTTGGAGCAGTTGACGACTGCACTCTTTTTCCAAATCAAACCCTTGTTGTGGGGCAGAATTTGATATCTCCAAACCAAGTTTTTGAAATGGGTTTTTTCTCGGCAGGAAAATCTTCAAATAGATTCATG...

CDS

2 records

下载 CDS FASTA

LOC131007668
ATGGCGCTCTTCTTTTTCACTACAATCCTCTGCTCCCTGCTTCACTCCATCCCCTTTCTGAGTTTAACAGTTGGAGCAGTTGACGACTGCACTCTTTTTCCAAATCAAACCCTTGTTGTGGGGCAGAATTTGATATCTCCAAACCAAGTTTTTGAAATGGGTTTTTTCTCGGCAGGAAAATCTTCAAATAGATTCATGGGAATATGGTACAAGAGCACACCAGAAGTCGTAGTCTGGGTTGCAAACAGACACCATCCCAT...

Protein

2 records

下载 Protein FASTA

XP_057790582.1
MALFFFTTILCSLLHSIPFLSLTVGAVDDCTLFPNQTLVVGQNLISPNQVFEMGFFSAGKSSNRFMGIWYKSTPEVVVWVANRHHPITASQAPVLMISRNGSLVISSGKSIIWLVNSSLVASNPVLQLLDSGNLVLAENTSYIWQSFDYLTDTLLPGMNMVDDVDAGVERHLTSWRSPDDPSPGEFVSKIQNRGLADLVTLRGAIKRYRVGQWNGMYFCGGISFPNSIYKPDLVFKKDWLITMGEPFESSIPARTTLDTS...

XP_057790583.1
MALFFFTTILCSLLHSIPFLSLTVGAVDDCTLFPNQTLVVGQNLISPNQVFEMGFFSAGKSSNRFMGIWYKSTPEVVVWVANRHHPITASQAPVLMISRNGSLVISSGKSIIWLVNSSLVASNPVLQLLDSGNLVLAENTSYIWQSFDYLTDTLLPGMNMVDDVDAGVERHLTSWRSPDDPSPGEFVSKIQNRGLADLVTLRGAIKRYRVGQWNGMYFCGGISFPNSIYKPDLVFKKDWLITMGEPFESSIPARTTLDTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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