当前解析结果
SmilChr02G001417| 统一新 Gene ID | SmilChr02G001417 |
|---|---|
| 名称 | SmilChr02G001417 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26799343 - 26803032 / - |
| NCBI Gene ID | LOC131007665 |
|---|---|
| GeneID | 131007665 |
| locus_tag | - |
| NCBI Name | LOC131007665 |
| 原始查询 | SmilChr02G001417 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=42.4; qcov=1.04; evalue=0; confidence=medium |
| Rice | Os01g0784200- identity=41; qcov=1.06; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007665 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790574.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790574.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790574.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790574.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790574.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26799921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B137,D4 |
Chr2:26799927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B78 |
Chr2:26800103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B58,C17 |
Chr2:26800157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B137,D4 |
Chr2:26800194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C78,D10 |
Chr2:26800234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr2:26800826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr2:26801072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,D4 |
Chr2:26801311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:26801863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr2:26801888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:26801998 |
C |
CT |
1bp_insertion | frameshift_variant | 5 | B122,B89,B94,C16,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790574.1PF01453
B_lectin 77-176 aa
PF00954
S_locus_glycop 208-316 aa
PF08276
PAN_2 337-403 aa
PF00069
Pkinase 498-697 aa
PF07714
PK_Tyr_Ser-Thr 498-767 aa
XP_057790575.1PF01453
B_lectin 77-176 aa
PF00954
S_locus_glycop 208-316 aa
PF08276
PAN_2 337-403 aa
PF00069
Pkinase 497-696 aa
PF07714
PK_Tyr_Ser-Thr 497-766 aa
XP_057790576.1PF01453
B_lectin 77-176 aa
PF00954
S_locus_glycop 208-316 aa
PF00069
Pkinase 459-659 aa
PF07714
PK_Tyr_Ser-Thr 459-728 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790574.1 |
Pfam | PF01453 |
B_lectin | Repeat | 77 | 176 | 1.8e-32 | 112.6 | D-mannose binding lectin |
XP_057790574.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 208 | 316 | 1.1e-18 | 68.4 | S-locus glycoprotein domain |
XP_057790574.1 |
Pfam | PF08276 |
PAN_2 | Domain | 337 | 403 | 1.9e-17 | 63.9 | PAN-like domain |
XP_057790574.1 |
Pfam | PF00069 |
Pkinase | Domain | 498 | 697 | 4.9e-45 | 154.7 | Protein kinase domain |
XP_057790574.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 498 | 767 | 1.5e-47 | 162.8 | Protein tyrosine and serine/threonine kinase |
XP_057790575.1 |
Pfam | PF01453 |
B_lectin | Repeat | 77 | 176 | 1.7e-32 | 112.7 | D-mannose binding lectin |
XP_057790575.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 208 | 316 | 1.1e-18 | 68.4 | S-locus glycoprotein domain |
XP_057790575.1 |
Pfam | PF08276 |
PAN_2 | Domain | 337 | 403 | 1.9e-17 | 63.9 | PAN-like domain |
XP_057790575.1 |
Pfam | PF00069 |
Pkinase | Domain | 497 | 696 | 5e-45 | 154.7 | Protein kinase domain |
XP_057790575.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 497 | 766 | 1.5e-47 | 162.8 | Protein tyrosine and serine/threonine kinase |
XP_057790576.1 |
Pfam | PF01453 |
B_lectin | Repeat | 77 | 176 | 1.7e-32 | 112.7 | D-mannose binding lectin |
XP_057790576.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 208 | 316 | 4.4e-19 | 69.8 | S-locus glycoprotein domain |
XP_057790576.1 |
Pfam | PF00069 |
Pkinase | Domain | 459 | 659 | 4.5e-45 | 154.8 | Protein kinase domain |
XP_057790576.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 459 | 728 | 1.4e-47 | 163.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。