当前解析结果
SmilChr02G001422| 统一新 Gene ID | SmilChr02G001422 |
|---|---|
| 名称 | SmilChr02G001422 |
| 描述 | uncharacterized SmilChr02G001422 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26826653 - 26827854 / + |
| NCBI Gene ID | LOC131008205 |
|---|---|
| GeneID | 131008205 |
| locus_tag | - |
| NCBI Name | LOC131008205 |
| 原始查询 | SmilChr02G001422 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0439900; species=rice; confidence=weak |
| 产物 | hit=Os03g0439900; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os03g0439900- identity=23.4; qcov=0.655; evalue=5.82e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008205 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791080.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791080.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057791080.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057791080.1 |
| 5 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057791080.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26826665 |
C |
T |
EMS_canonical_SNV | stop_gained | 38 | A13,A22,A23,A24,A9,B128,B13,B140,B15,B19,B28,B35,B36,B37,B39,B40,B43,B47,B64,B70,B76,B96,B99,C15,C2,C28,C3,C31,C32,C37,C40,C58,C60,C65,C67,C68,C71,D7 |
Chr2:26826683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:26826687 |
G |
GA |
1bp_insertion | frameshift_variant | 85 | A10,A15,A19,A20,A25,A3,A6,B1,B102,B105,B106,B109,B11,B110,B111,B120,B123,B125,B131,B133,B134,B136,B16,B17,B18,B2,B29,B36,B39,B41,B42,B43,B44,B45,B51,B52,B54,B55,B58,B59,B6,B61,B63,B66,B72,B74,B75,B76,B79,B83,B85,B90,B91,B92,B95,C1,C15,C17,C19,C2,C20,C23,C25,C3,C31,C32,C34,C36,C38,C39,C41,C42,C52,C53,C60,C61,C64,C68,C81,C82,C85,C86,D2,D6,D7 |
Chr2:26826690 |
AG |
A |
1bp_deletion | frameshift_variant | 85 | A10,A15,A19,A20,A25,A3,A6,B1,B102,B105,B106,B108,B109,B11,B110,B111,B120,B123,B125,B131,B133,B134,B136,B16,B17,B18,B2,B29,B36,B39,B41,B42,B43,B44,B45,B51,B52,B54,B55,B58,B59,B6,B61,B63,B66,B72,B74,B75,B76,B79,B83,B85,B90,B91,B92,B95,C1,C15,C17,C19,C2,C20,C23,C25,C3,C31,C32,C34,C36,C38,C39,C41,C50,C53,C60,C61,C64,C68,C81,C82,C85,C86,D2,D6,D7 |
Chr2:26826700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B125,B74 |
Chr2:26826729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,C4 |
Chr2:26826756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B95,C8 |
Chr2:26826766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C49 |
Chr2:26826781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:26826782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr2:26826796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,C49 |
Chr2:26826816 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B120 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。