Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001424`

染色体: Chr02 坐标: 26884547-26888552 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001424`
名称	SmilChr02G001424
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	26884547 - 26888552 / `-`

ID 对照

NCBI Gene ID	`LOC131007663`
GeneID	`131007663`
locus_tag	`-`
NCBI Name	`LOC131007663`
原始查询	`SmilChr02G001424`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=44.8; qcov=0.989; evalue=0; confidence=medium
Rice	`Os01g0784200` - identity=43.8; qcov=1.01; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007663

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790571.1`
2	Nucleus	细胞核	0.00000	`XP_057790571.1`
3	Chromosome	染色体	0.00000	`XP_057790571.1`
4	Centromere	着丝粒	0.00000	`XP_057790571.1`
5	Chromatin	染色质	0.00000	`XP_057790571.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:26885133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B32,C27,C83,C85
`Chr2:26885292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,C27,C83,C85
`Chr2:26885683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B15,B35,B86
`Chr2:26885831`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,D11,D3
`Chr2:26886201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:26886253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr2:26886260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:26886555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B71
`Chr2:26886855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr2:26886893`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C34
`Chr2:26886893`	`TC`	`T`	1bp_deletion	CDS_variant	1	C34
`Chr2:26887496`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790571.1

814 aa

407

814

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-175 aa PF00954 S_locus_glycop 208-316 aa PF08276 PAN_2 337-403 aa PF00069 Pkinase 496-696 aa PF07714 PK_Tyr_Ser-Thr 497-766 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790571.1`	Pfam	`PF01453`	B_lectin	Repeat	77	175	3.3e-29	102.1	D-mannose binding lectin
`XP_057790571.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	7.6e-20	72.2	S-locus glycoprotein domain
`XP_057790571.1`	Pfam	`PF08276`	PAN_2	Domain	337	403	2.2e-19	70.0	PAN-like domain
`XP_057790571.1`	Pfam	`PF00069`	Pkinase	Domain	496	696	3.6e-43	148.6	Protein kinase domain
`XP_057790571.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	497	766	5.2e-47	161.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934588.1
AAATTGACCAAGATAATGTATAGCACCAGCAGTAGAGCATTTGTTCAAGTTGCTGTACACATAAGTTTAAGTTGCTGTACACATAAGAAGTCATACAGATCCGCCATCTCTCTCTGACCTGCGCCGAAAACACACACACAGCCACAAAGAGCCCTCGCCGCCTCCGCCTCCGCCTCCGGCGGAGGGTGCCGCCCTCAGCCACCACGGCCCCCTCTCGACTATCTCTGTGTTCTCATACTACACAGACACCCAAATCGCCG...

CDS

1 records

下载 CDS FASTA

LOC131007663
ATGGCGCTCTTCCTTTTCACTACAATCCTCTGCTCCCTGCTACAATCCATCCCCTTTCAAAGTTCAACTGTTGGAGCAGTTGATGATCACATACTTTTCCCAAATCTAACACTTGTTCTTGGGCAGACTCTCATTTCTCAAAACCAAATTTTTGAAATGGGTTTCTTCTCGCCTGGAAAATCTTCAAACAGATTCTTGGGAATATGGTACAAGAGCACACCACAAGTTGTAGTCTGGGTTGCAAACAGAAACCATCCCAT...

Protein

1 records

下载 Protein FASTA

XP_057790571.1
MALFLFTTILCSLLQSIPFQSSTVGAVDDHILFPNLTLVLGQTLISQNQIFEMGFFSPGKSSNRFLGIWYKSTPQVVVWVANRNHPITASQPPLFMISGNGSLVISSGKSIIWSASSSEVASNPFLELLDSGNLVLVDKTRTVWQSFDYPTDTMLPGMILVDDVHAGVERNLTSWTSPDDPSPGDFVHKIQNRGLADLVTLRGESKRYRLGQWNGQYYGGGQRFPSAIYKPELIFRQEKLISVGEPYDSSLLVRTILDTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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