当前解析结果
SmilChr02G001433| 统一新 Gene ID | SmilChr02G001433 |
|---|---|
| 名称 | SmilChr02G001433 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 27035597 - 27038833 / - |
| NCBI Gene ID | LOC131007676 |
|---|---|
| GeneID | 131007676 |
| locus_tag | - |
| NCBI Name | LOC131007676 |
| 原始查询 | SmilChr02G001433 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=47.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0550500- identity=43.1; qcov=1.02; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007676 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790592.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790592.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790592.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790592.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790592.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:27035710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:27036024 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C57 |
Chr2:27036040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:27036798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C48 |
Chr2:27036813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr2:27036923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:27037520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr2:27037725 |
C |
CA |
1bp_insertion | frameshift_variant | 11 | B123,B17,B47,B51,B87,C18,C22,C3,C39,C54,D4 |
Chr2:27037813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:27038189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B26,D3 |
Chr2:27038210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,B80 |
Chr2:27038246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B136,B32,B74,C54,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790592.1PF01453
B_lectin 77-178 aa
PF00954
S_locus_glycop 210-320 aa
PF08276
PAN_2 341-407 aa
PF00069
Pkinase 502-701 aa
PF07714
PK_Tyr_Ser-Thr 503-700 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790592.1 |
Pfam | PF01453 |
B_lectin | Repeat | 77 | 178 | 6.6e-31 | 107.6 | D-mannose binding lectin |
XP_057790592.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 210 | 320 | 2.2e-21 | 77.2 | S-locus glycoprotein domain |
XP_057790592.1 |
Pfam | PF08276 |
PAN_2 | Domain | 341 | 407 | 3.6e-19 | 69.4 | PAN-like domain |
XP_057790592.1 |
Pfam | PF00069 |
Pkinase | Domain | 502 | 701 | 3.3e-43 | 148.7 | Protein kinase domain |
XP_057790592.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 503 | 700 | 6.7e-45 | 154.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。