Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001438`

染色体: Chr02 坐标: 27055530-27064805 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001438`
名称	SmilChr02G001438
描述	uncharacterized SmilChr02G001438
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27055530 - 27064805 / `-`

ID 对照

NCBI Gene ID	`LOC131008212`
GeneID	`131008212`
locus_tag	`-`
NCBI Name	`LOC131008212`
原始查询	`SmilChr02G001438`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837]; symbol=AT4G27290; hit=AT4G27290; species=arabidopsis; confidence=medium
产物	S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837]; symbol=AT4G27290; hit=AT4G27290; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=45; qcov=0.486; evalue=0; confidence=medium
Rice	`Os01g0784700` - identity=42.7; qcov=0.506; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131008212

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057791088.1`
2	Nucleus	细胞核	0.00000	`XP_057791088.1`
3	Chromosome	染色体	0.00000	`XP_057791088.1`
4	Centromere	着丝粒	0.00000	`XP_057791088.1`
5	Chromatin	染色质	0.00000	`XP_057791088.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27055754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B26,D3
`Chr2:27055825`	`GTT`	`G`	2bp_deletion	frameshift_variant	2	B42,D10
`Chr2:27055825`	`GTT`	`G`	2bp_deletion	CDS_variant	2	B42,D10
`Chr2:27055828`	`G`	`GCA`	2bp_insertion	frameshift_variant	2	B42,D10
`Chr2:27055828`	`G`	`GCA`	2bp_insertion	CDS_variant	2	B42,D10
`Chr2:27055834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,D10
`Chr2:27055840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr2:27055860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr2:27056138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C13,C30
`Chr2:27056202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr2:27056263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:27056781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791088.1

1653 aa

826

1653

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-179 aa PF00954 S_locus_glycop 211-318 aa PF08276 PAN_2 340-407 aa PF00069 Pkinase 505-704 aa PF07714 PK_Tyr_Ser-Thr 507-774 aa PF01453 B_lectin 920-1021 aa PF00954 S_locus_glycop 1054-1162 aa PF08276 PAN_2 1184-1250 aa PF00069 Pkinase 1343-1542 aa PF07714 PK_Tyr_Ser-Thr 1345-1608 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791088.1`	Pfam	`PF01453`	B_lectin	Repeat	74	179	1.4e-56	190.2	D-mannose binding lectin
`XP_057791088.1`	Pfam	`PF00954`	S_locus_glycop	Domain	211	318	2e-44	151.3	S-locus glycoprotein domain
`XP_057791088.1`	Pfam	`PF08276`	PAN_2	Domain	340	407	1.1e-33	115.9	PAN-like domain
`XP_057791088.1`	Pfam	`PF00069`	Pkinase	Domain	505	704	7.7e-91	304.8	Protein kinase domain
`XP_057791088.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	507	774	3.6e-90	302.5	Protein tyrosine and serine/threonine kinase
`XP_057791088.1`	Pfam	`PF01453`	B_lectin	Repeat	920	1021	1.4e-56	190.2	D-mannose binding lectin
`XP_057791088.1`	Pfam	`PF00954`	S_locus_glycop	Domain	1054	1162	2e-44	151.3	S-locus glycoprotein domain
`XP_057791088.1`	Pfam	`PF08276`	PAN_2	Domain	1184	1250	1.1e-33	115.9	PAN-like domain
`XP_057791088.1`	Pfam	`PF00069`	Pkinase	Domain	1343	1542	7.7e-91	304.8	Protein kinase domain
`XP_057791088.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	1345	1608	3.6e-90	302.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935105.1
TATGCAGAGTCTTGCTTGGCATCATCTATAGATATACATTTGACCAGTTTTATTTAAATGAAATTCATTCTAATTGAGCTCCATTTAATTAGTTGCATACCTTCGTTTTCAAATGATGAAGCATTTGATCTTCAACAAAATCCTGCGCATGCTGTTTGTATCCATAATCTTTCCACAACTCTCAGTTTCTGTAGATACACTCCTCCCAAATCAAACATTAGCCGTCGGGCAGAGTTTGGTGAGTCAAAACCAAGTTTTCG...

CDS

1 records

下载 CDS FASTA

LOC131008212
ATGATGAAGCATTTGATCTTCAACAAAATCCTGCGCATGCTGTTTGTATCCATAATCTTTCCACAACTCTCAGTTTCTGTAGATACACTCCTCCCAAATCAAACATTAGCCGTCGGGCAGAGTTTGGTGAGTCAAAACCAAGTTTTCGAGCTGCAATTTCTGCGCCCCGGAAACTCAAGCACCTTCTTGGGCATACGCTACAAAGGCACACCAGATGTCGTAGCTTGGGTTGCAAACAGAAACAATCCCATCACAGACGC...

Protein

1 records

下载 Protein FASTA

XP_057791088.1
MMKHLIFNKILRMLFVSIIFPQLSVSVDTLLPNQTLAVGQSLVSQNQVFELQFLRPGNSSTFLGIRYKGTPDVVAWVANRNNPITDAQGVVFAVAGNGTLLITRNGNVIWSASPSTVASRPFVRLLDTGNLVVVDDTTLEEGNSILWQGFDHPTDTMLPGMKILDDLDSGVETNLTSWRNLDDPLPGEFVFKIMNRGLPQMVICRGESIFYRTGIWNGLQFSSMPSLLNSVFHPDFNISHGRLISVSKAYNSSLFTRMNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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