Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001460

染色体: Chr02 坐标: 27299186-27301282 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001460
名称SmilChr02G001460
描述L-type lectin-domain containing receptor kinase IX.1-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向27299186 - 27301282 / -

ID 对照

NCBI Gene IDLOC131007677
GeneID131007677
locus_tag-
NCBI NameLOC131007677
原始查询SmilChr02G001460

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述L-type lectin-domain containing receptor kinase IX.1-like
产物L-type lectin-domain containing receptor kinase IX.1-like
ArabidopsisAT5G10530 (AT5G10530)
Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830918]
identity=45.3; qcov=0.994; evalue=1.74e-178; confidence=high
RiceOs07g0569550 (OJ1019_E02.19)
-
identity=47.9; qcov=0.992; evalue=0; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding)
KEGG-
PfamPF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131007677

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057790593.1
2 Nucleus 细胞核 0.00000 XP_057790593.1
3 Chromosome 染色体 0.00000 XP_057790593.1
4 Centromere 着丝粒 0.00000 XP_057790593.1
5 Chromatin 染色质 0.00000 XP_057790593.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:27299256 C T EMS_canonical_SNV CDS_variant 1 B98
Chr2:27299316 C T EMS_canonical_SNV CDS_variant 1 B131
Chr2:27299398 C T EMS_canonical_SNV CDS_variant 1 C2
Chr2:27299418 G A EMS_canonical_SNV CDS_variant 1 C82
Chr2:27299437 G A EMS_canonical_SNV CDS_variant 5 A13,B102,B139,B36,C11
Chr2:27299444 G A EMS_canonical_SNV CDS_variant 5 A3,B115,B127,B32,B64
Chr2:27299446 C T EMS_canonical_SNV CDS_variant 5 A13,B102,B139,B36,C11
Chr2:27299487 C T EMS_canonical_SNV CDS_variant 1 B102
Chr2:27299515 C T EMS_canonical_SNV CDS_variant 5 A13,B102,B139,B36,C11
Chr2:27299575 C T EMS_canonical_SNV CDS_variant 2 B124,B41
Chr2:27299627 G A EMS_canonical_SNV CDS_variant 5 B33,B6,B98,C67,C86
Chr2:27299718 C T EMS_canonical_SNV CDS_variant 3 B125,C42,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790593.1
644 aa
N
1
322
644
Lectin_legB
Pkinase
PK_Tyr_Ser-Thr
C
PF00139 Lectin_legB 25-277 aa PF00069 Pkinase 347-614 aa PF07714 PK_Tyr_Ser-Thr 348-615 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790593.1 Pfam PF00139 Lectin_legB Domain 25 277 2.9e-59 201.3 Legume lectin domain
XP_057790593.1 Pfam PF00069 Pkinase Domain 347 614 2.7e-51 175.2 Protein kinase domain
XP_057790593.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 348 615 8.1e-48 163.7 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057934610.1
TTGGTAAAAAAGACTCCGTCATCAAGCCCTCCAATTTCTTCCCCAATAATTTTTAAATTTTTCTTGAATACTGAAAAACATAGTAAGAGTTAGAAACATGTGGACATCCGTGGTTTCTTCCATTTCCATGTTTGTGTTCCTGGCGTTGATCATCCCTTCAACAGTCTCACTGAACTTCAACATGTCTCCCATCAGTAGATCAGACGGCGGCCACTTCAACTTCACGGGCGACGCTTACATCGCCGAAGACGGCATCCAAG...

CDS

1 records

下载 CDS FASTA
LOC131007677
ATGTGGACATCCGTGGTTTCTTCCATTTCCATGTTTGTGTTCCTGGCGTTGATCATCCCTTCAACAGTCTCACTGAACTTCAACATGTCTCCCATCAGTAGATCAGACGGCGGCCACTTCAACTTCACGGGCGACGCTTACATCGCCGAAGACGGCATCCAAGTCACAACCAACGAGCACGACCAAGCGCGGGTGGACAGAGCCGGGCGAGCCACCTACCTCGAGACGCTGCACTTGTGGGACAAGGCTTCACAGAAGCT...

Protein

1 records

下载 Protein FASTA
XP_057790593.1
MWTSVVSSISMFVFLALIIPSTVSLNFNMSPISRSDGGHFNFTGDAYIAEDGIQVTTNEHDQARVDRAGRATYLETLHLWDKASQKLADFSTHFSIVIDSYGSDKFGDGLAFFLAPQGSSIKPWSYGSHLGLGNGSSPVDSSSLESFVAVEFDTVPNRGDPPSNGGPVVPHVGIDLNSITSVATTTWYNNISAGWENDVWVTYNSTTKILRIDFTGNSNGIFRQHNLSYEVDLRNYLPEYVTVGFAAATGALFEKNNVKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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