当前解析结果
SmilChr02G001460| 统一新 Gene ID | SmilChr02G001460 |
|---|---|
| 名称 | SmilChr02G001460 |
| 描述 | L-type lectin-domain containing receptor kinase IX.1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 27299186 - 27301282 / - |
| NCBI Gene ID | LOC131007677 |
|---|---|
| GeneID | 131007677 |
| locus_tag | - |
| NCBI Name | LOC131007677 |
| 原始查询 | SmilChr02G001460 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | L-type lectin-domain containing receptor kinase IX.1-like |
| 产物 | L-type lectin-domain containing receptor kinase IX.1-like |
| Arabidopsis | AT5G10530 (AT5G10530)Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830918] identity=45.3; qcov=0.994; evalue=1.74e-178; confidence=high |
| Rice | Os07g0569550 (OJ1019_E02.19)- identity=47.9; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007677 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790593.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790593.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790593.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790593.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790593.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:27299256 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:27299316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:27299398 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr2:27299418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:27299437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B102,B139,B36,C11 |
Chr2:27299444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B115,B127,B32,B64 |
Chr2:27299446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B102,B139,B36,C11 |
Chr2:27299487 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:27299515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B102,B139,B36,C11 |
Chr2:27299575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B41 |
Chr2:27299627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B33,B6,B98,C67,C86 |
Chr2:27299718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C42,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790593.1PF00139
Lectin_legB 25-277 aa
PF00069
Pkinase 347-614 aa
PF07714
PK_Tyr_Ser-Thr 348-615 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790593.1 |
Pfam | PF00139 |
Lectin_legB | Domain | 25 | 277 | 2.9e-59 | 201.3 | Legume lectin domain |
XP_057790593.1 |
Pfam | PF00069 |
Pkinase | Domain | 347 | 614 | 2.7e-51 | 175.2 | Protein kinase domain |
XP_057790593.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 348 | 615 | 8.1e-48 | 163.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。