Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001465`

染色体: Chr02 坐标: 27386951-27390400 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001465`
名称	SmilChr02G001465
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27386951 - 27390400 / `+`

ID 对照

NCBI Gene ID	`LOC131007653`
GeneID	`131007653`
locus_tag	`-`
NCBI Name	`LOC131007653`
原始查询	`SmilChr02G001465`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=44.1; qcov=1.01; evalue=0; confidence=medium
Rice	`Os01g0784200` - identity=40.9; qcov=1.07; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007653

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790551.1`
2	Nucleus	细胞核	0.00000	`XP_057790551.1`
3	Chromosome	染色体	0.00000	`XP_057790551.1`
4	Centromere	着丝粒	0.00000	`XP_057790551.1`
5	Chromatin	染色质	0.00000	`XP_057790551.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27387153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B6,B82,C67,C81
`Chr2:27387399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:27387457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:27387463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B123,B51,B74,C68,D3
`Chr2:27387535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B43,B53,C5
`Chr2:27387580`	`G`	`A`	EMS_canonical_SNV	stop_gained	18	A19,B123,B36,B42,B43,B47,B52,B74,B87,B93,C18,C23,C32,C39,C60,C65,C68,D10
`Chr2:27387694`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	B136,B17,B36,B47,B51,B87,C18,C60,C65
`Chr2:27387760`	`CA`	`C`	1bp_deletion	frameshift_variant	21	A19,B123,B136,B17,B36,B42,B43,B47,B51,B72,B74,B87,B93,C18,C23,C3,C32,C39,C50,C65,C68
`Chr2:27387827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B26,D3
`Chr2:27387880`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C48
`Chr2:27387880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:27387887`	`G`	`GTA`	2bp_insertion	frameshift_variant	3	B31,C62,C64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790551.1

844 aa

422

844

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 496-709 aa PF07714 PK_Tyr_Ser-Thr 498-696 aa

XP_057790552.1

843 aa

422

843

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 496-708 aa PF07714 PK_Tyr_Ser-Thr 498-695 aa

XP_057790553.1

827 aa

414

827

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 479-692 aa PF07714 PK_Tyr_Ser-Thr 481-679 aa

XP_057790554.1

826 aa

413

826

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 479-691 aa PF07714 PK_Tyr_Ser-Thr 481-678 aa

XP_057790555.1

814 aa

407

814

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 496-705 aa PF07714 PK_Tyr_Ser-Thr 498-737 aa

XP_057790556.1

813 aa

406

813

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 496-704 aa PF07714 PK_Tyr_Ser-Thr 498-736 aa

XP_057790557.1

797 aa

398

797

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 479-688 aa PF07714 PK_Tyr_Ser-Thr 481-720 aa

XP_057790558.1

796 aa

398

796

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-178 aa PF00954 S_locus_glycop 210-318 aa PF08276 PAN_2 339-404 aa PF00069 Pkinase 479-687 aa PF07714 PK_Tyr_Ser-Thr 481-719 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790551.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	7.5e-30	104.2	D-mannose binding lectin
`XP_057790551.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.6e-20	73.7	S-locus glycoprotein domain
`XP_057790551.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3.2e-21	75.9	PAN-like domain
`XP_057790551.1`	Pfam	`PF00069`	Pkinase	Domain	496	709	7.3e-47	160.7	Protein kinase domain
`XP_057790551.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	498	696	6.7e-46	157.4	Protein tyrosine and serine/threonine kinase
`XP_057790552.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	7.5e-30	104.2	D-mannose binding lectin
`XP_057790552.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.6e-20	73.7	S-locus glycoprotein domain
`XP_057790552.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3.2e-21	75.9	PAN-like domain
`XP_057790552.1`	Pfam	`PF00069`	Pkinase	Domain	496	708	2.9e-46	158.7	Protein kinase domain
`XP_057790552.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	498	695	1.5e-47	162.8	Protein tyrosine and serine/threonine kinase
`XP_057790553.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	1e-29	103.8	D-mannose binding lectin
`XP_057790553.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.6e-20	73.7	S-locus glycoprotein domain
`XP_057790553.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3.1e-21	76.0	PAN-like domain
`XP_057790553.1`	Pfam	`PF00069`	Pkinase	Domain	479	692	7.1e-47	160.7	Protein kinase domain
`XP_057790553.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	679	6.4e-46	157.5	Protein tyrosine and serine/threonine kinase
`XP_057790554.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	6.1e-30	104.5	D-mannose binding lectin
`XP_057790554.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.6e-20	73.7	S-locus glycoprotein domain
`XP_057790554.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3.1e-21	76.0	PAN-like domain
`XP_057790554.1`	Pfam	`PF00069`	Pkinase	Domain	479	691	2.8e-46	158.8	Protein kinase domain
`XP_057790554.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	678	1.4e-47	162.9	Protein tyrosine and serine/threonine kinase
`XP_057790555.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	7.1e-30	104.3	D-mannose binding lectin
`XP_057790555.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.5e-20	73.8	S-locus glycoprotein domain
`XP_057790555.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3.1e-21	76.0	PAN-like domain
`XP_057790555.1`	Pfam	`PF00069`	Pkinase	Domain	496	705	9.4e-47	160.3	Protein kinase domain
`XP_057790555.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	498	737	4e-47	161.4	Protein tyrosine and serine/threonine kinase
`XP_057790556.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	7.1e-30	104.3	D-mannose binding lectin
`XP_057790556.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.5e-20	73.8	S-locus glycoprotein domain
`XP_057790556.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3.1e-21	76.0	PAN-like domain
`XP_057790556.1`	Pfam	`PF00069`	Pkinase	Domain	496	704	3.7e-46	158.4	Protein kinase domain
`XP_057790556.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	498	736	8.8e-49	166.9	Protein tyrosine and serine/threonine kinase
`XP_057790557.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	9.6e-30	103.9	D-mannose binding lectin
`XP_057790557.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.4e-20	73.8	S-locus glycoprotein domain
`XP_057790557.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3e-21	76.0	PAN-like domain
`XP_057790557.1`	Pfam	`PF00069`	Pkinase	Domain	479	688	9.2e-47	160.4	Protein kinase domain
`XP_057790557.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	720	3.9e-47	161.5	Protein tyrosine and serine/threonine kinase
`XP_057790558.1`	Pfam	`PF01453`	B_lectin	Repeat	74	178	9.7e-30	103.8	D-mannose binding lectin
`XP_057790558.1`	Pfam	`PF00954`	S_locus_glycop	Domain	210	318	2.4e-20	73.8	S-locus glycoprotein domain
`XP_057790558.1`	Pfam	`PF08276`	PAN_2	Domain	339	404	3e-21	76.0	PAN-like domain
`XP_057790558.1`	Pfam	`PF00069`	Pkinase	Domain	479	687	3.7e-46	158.4	Protein kinase domain
`XP_057790558.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	719	8.5e-49	166.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057934573.1
TTTATTAGTTCTCATATTAAGAACCCAATTCTCGCATCATTTATCCATCAAAGTCTTCTACTTCATCTTTTTTTGTGACTAAATAGGATCACCAAGAAAATGGCGCCTTTCTGTTTCACTGCAATCCTCTGCTCTTTGGTTTACTCCTTGGCGTTTCTCAAATTAACCTCTGGAGCAGGTCATTCACTTTTCAACAACCAAACCCTTGCTATTGGCCACACTTTGGTTTCTGAGACCCAAGTTTTTGAGCTCGGGTTTTT...

XM_057934568.1
CAATTCTCGCATCATTTATCCATCAAAGTCTTCTACTTCATCTTTTTTTGTGACTAAATAGGATCACCAAGAAAATGGCGCCTTTCTGTTTCACTGCAATCCTCTGCTCTTTGGTTTACTCCTTGGCGTTTCTCAAATTAACCTCTGGAGCAGGTCATTCACTTTTCAACAACCAAACCCTTGCTATTGGCCACACTTTGGTTTCTGAGACCCAAGTTTTTGAGCTCGGGTTTTTCCGCCCTGGAAAATCAGCGAATTTG...

CDS

8 records

下载 CDS FASTA

LOC131007653
ATGGCGCCTTTCTGTTTCACTGCAATCCTCTGCTCTTTGGTTTACTCCTTGGCGTTTCTCAAATTAACCTCTGGAGCAGGTCATTCACTTTTCAACAACCAAACCCTTGCTATTGGCCACACTTTGGTTTCTGAGACCCAAGTTTTTGAGCTCGGGTTTTTCCGCCCTGGAAAATCAGCGAATTTGTTCTTAGGGATATGGTACAAAGCCATACCTGATACAGTAGTTTGGGTTGCAAACAGAAACAATCCCATCACTGA...

Protein

8 records

下载 Protein FASTA

XP_057790551.1
MAPFCFTAILCSLVYSLAFLKLTSGAGHSLFNNQTLAIGHTLVSETQVFELGFFRPGKSANLFLGIWYKAIPDTVVWVANRNNPITDSQGVVFAVAGNGSLLISRDGSIIWSANPSTAASRPAVRLLETGNLVVVDEATEEGFYLWQSFDFPTDTWLSGMKMVDDLDAGVSTNLTSWRNWDDPSPGDFFAKIESHAMGEMVMYRGTRKRFRTGKWNGIYFNGMPRFRSTVPATELIFKEERLISIKMPYQSSIIVRATLD...

XP_057790552.1
MAPFCFTAILCSLVYSLAFLKLTSGAGHSLFNNQTLAIGHTLVSETQVFELGFFRPGKSANLFLGIWYKAIPDTVVWVANRNNPITDSQGVVFAVAGNGSLLISRDGSIIWSANPSTAASRPAVRLLETGNLVVVDEATEEGFYLWQSFDFPTDTWLSGMKMVDDLDAGVSTNLTSWRNWDDPSPGDFFAKIESHAMGEMVMYRGTRKRFRTGKWNGIYFNGMPRFRSTVPATELIFKEERLISIKMPYQSSIIVRATLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器