Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001477`

染色体: Chr02 坐标: 27620996-27624695 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001477`
名称	SmilChr02G001477
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27620996 - 27624695 / `-`

ID 对照

NCBI Gene ID	`LOC131007667`
GeneID	`131007667`
locus_tag	`-`
NCBI Name	`LOC131007667`
原始查询	`SmilChr02G001477`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=41.9; qcov=1.07; evalue=0; confidence=medium
Rice	`Os01g0784200` - identity=39.9; qcov=1.11; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007667

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790577.1`
2	Nucleus	细胞核	0.00000	`XP_057790577.1`
3	Chromosome	染色体	0.00000	`XP_057790577.1`
4	Centromere	着丝粒	0.00000	`XP_057790577.1`
5	Chromatin	染色质	0.00000	`XP_057790577.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27621380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:27621416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:27621442`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B82
`Chr2:27621442`	`TC`	`T`	1bp_deletion	CDS_variant	1	B82
`Chr2:27621580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:27621756`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B111,B66
`Chr2:27621769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:27621810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr2:27621997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:27622057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:27622163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:27622459`	`G`	`GGT`	2bp_insertion	frameshift_variant	21	B105,B120,B128,B129,B134,B21,B61,B64,B66,B73,B79,B8,B81,C20,C31,C35,C38,C47,C55,C63,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790577.1

814 aa

407

814

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-176 aa PF00954 S_locus_glycop 208-316 aa PF08276 PAN_2 337-403 aa PF00069 Pkinase 498-697 aa PF07714 PK_Tyr_Ser-Thr 498-767 aa

XP_057790578.1

813 aa

406

813

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-176 aa PF00954 S_locus_glycop 208-316 aa PF08276 PAN_2 337-403 aa PF00069 Pkinase 497-696 aa PF07714 PK_Tyr_Ser-Thr 497-766 aa

XP_057790580.1

775 aa

388

775

B_lectin

S_locus_glycop

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-176 aa PF00954 S_locus_glycop 208-316 aa PF00069 Pkinase 459-659 aa PF07714 PK_Tyr_Ser-Thr 459-728 aa

XP_057790581.1

774 aa

387

774

B_lectin

S_locus_glycop

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-176 aa PF00954 S_locus_glycop 208-316 aa PF00069 Pkinase 458-658 aa PF07714 PK_Tyr_Ser-Thr 458-727 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790577.1`	Pfam	`PF01453`	B_lectin	Repeat	77	176	1.8e-32	112.7	D-mannose binding lectin
`XP_057790577.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	1.1e-18	68.4	S-locus glycoprotein domain
`XP_057790577.1`	Pfam	`PF08276`	PAN_2	Domain	337	403	1.3e-17	64.4	PAN-like domain
`XP_057790577.1`	Pfam	`PF00069`	Pkinase	Domain	498	697	2.5e-45	155.7	Protein kinase domain
`XP_057790577.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	498	767	1.3e-47	163.0	Protein tyrosine and serine/threonine kinase
`XP_057790578.1`	Pfam	`PF01453`	B_lectin	Repeat	77	176	1.7e-32	112.7	D-mannose binding lectin
`XP_057790578.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	1.1e-18	68.4	S-locus glycoprotein domain
`XP_057790578.1`	Pfam	`PF08276`	PAN_2	Domain	337	403	1.3e-17	64.4	PAN-like domain
`XP_057790578.1`	Pfam	`PF00069`	Pkinase	Domain	497	696	2.5e-45	155.7	Protein kinase domain
`XP_057790578.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	497	766	1.3e-47	163.0	Protein tyrosine and serine/threonine kinase
`XP_057790580.1`	Pfam	`PF01453`	B_lectin	Repeat	77	176	1.6e-32	112.8	D-mannose binding lectin
`XP_057790580.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	4.4e-19	69.8	S-locus glycoprotein domain
`XP_057790580.1`	Pfam	`PF00069`	Pkinase	Domain	459	659	2.3e-45	155.8	Protein kinase domain
`XP_057790580.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	459	728	1.2e-47	163.2	Protein tyrosine and serine/threonine kinase
`XP_057790581.1`	Pfam	`PF01453`	B_lectin	Repeat	77	176	1.6e-32	112.8	D-mannose binding lectin
`XP_057790581.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	4.4e-19	69.8	S-locus glycoprotein domain
`XP_057790581.1`	Pfam	`PF00069`	Pkinase	Domain	458	658	2.3e-45	155.8	Protein kinase domain
`XP_057790581.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	458	727	1.2e-47	163.2	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057934598.1
TATTTAACTTATCGATTTAATTTTCTTTTCTTTTTTTTTTCTTTTCTTTTATTCACTGTTGTTCTACCATAAACGTTACGTCACCAGCAAAATTATTTTCGGAGCTGCACAGGTAATCAGATTTGAACATGGCGCTTTTCTTTTTCATTACAATCCTCTGCTCCCTGCTTCCCTCCATCCCCTTTCTGAGTTTAATAGTTGGAGCAGTTGACGAGTGCACTCTTTTTCCATATCAAACCCTTGTTGTGGGGCAAACTTTG...

XM_057934594.1
TATTTAACTTATCGATTTAATTTTCTTTTCTTTTTTTTTTCTTTTCTTTTATTCACTGTTGTTCTACCATAAACGTTACGTCACCAGCAAAATTATTTTCGGAGCTGCACAGGTAATCAGATTTGAACATGGCGCTTTTCTTTTTCATTACAATCCTCTGCTCCCTGCTTCCCTCCATCCCCTTTCTGAGTTTAATAGTTGGAGCAGTTGACGAGTGCACTCTTTTTCCATATCAAACCCTTGTTGTGGGGCAAACTTTG...

CDS

4 records

下载 CDS FASTA

LOC131007667
ATGGCGCTTTTCTTTTTCATTACAATCCTCTGCTCCCTGCTTCCCTCCATCCCCTTTCTGAGTTTAATAGTTGGAGCAGTTGACGAGTGCACTCTTTTTCCATATCAAACCCTTGTTGTGGGGCAAACTTTGATATCTCCTAACCAAGTTTTTGAAATGGGTTTTTTCTCGCCTGGAAAATCTTCGAATAGATTCATGGGAATATGGTACAAGAGCACACCAGAAGTAGTAGTCTGGGTTGCAAACAGAAACCATCCCAT...

Protein

4 records

下载 Protein FASTA

XP_057790577.1
MALFFFITILCSLLPSIPFLSLIVGAVDECTLFPYQTLVVGQTLISPNQVFEMGFFSPGKSSNRFMGIWYKSTPEVVVWVANRNHPITASQAPVFKISGNGSLVISSGKSIIWLANSSVVASNPVLQLLDSGNLVLADNTSYLWQSFDYPTDTMLPGMKMVDDVDAGVERYLTSWRSPDDPSPGEYVHRIQNRGLAEVVTLRGATKRYRVGQWNGMYFCGGTPFPNSVYKPDLVFKQERLISMGEPFESSIPVRTTLDAS...

XP_057790578.1
MALFFFITILCSLLPSIPFLSLIVGAVDECTLFPYQTLVVGQTLISPNQVFEMGFFSPGKSSNRFMGIWYKSTPEVVVWVANRNHPITASQAPVFKISGNGSLVISSGKSIIWLANSSVVASNPVLQLLDSGNLVLADNTSYLWQSFDYPTDTMLPGMKMVDDVDAGVERYLTSWRSPDDPSPGEYVHRIQNRGLAEVVTLRGATKRYRVGQWNGMYFCGGTPFPNSVYKPDLVFKQERLISMGEPFESSIPVRTTLDAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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