Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001479`

染色体: Chr02 坐标: 27659998-27663191 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001479`
名称	SmilChr02G001479
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SRK
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27659998 - 27663191 / `-`

ID 对照

NCBI Gene ID	`LOC131007664`
GeneID	`131007664`
locus_tag	`-`
NCBI Name	`LOC131007664`
原始查询	`SmilChr02G001479`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase SRK
产物	G-type lectin S-receptor-like serine/threonine-protein kinase SRK
Arabidopsis	`AT4G21380` (RK3) receptor kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:827890] identity=63; qcov=0.875; evalue=1.7e-78; confidence=high
Rice	`Os01g0784200` - identity=55.1; qcov=1; evalue=9.13e-79; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007664

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790572.1`
2	Cytosol	细胞质基质	0.40000	`XP_057790573.1`
3	Nucleus	细胞核	0.00000	`XP_057790572.1`
4	Chromosome	染色体	0.00000	`XP_057790572.1`
5	Centromere	着丝粒	0.00000	`XP_057790572.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27660175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,B36,C23,C57
`Chr2:27660202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:27660358`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,C83
`Chr2:27660586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B15,B32,C83,C85
`Chr2:27660808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:27660853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:27661124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,C33,C84
`Chr2:27661709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B111,B131,B134,C22,C26
`Chr2:27662040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:27662214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B41,B90

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790572.1

814 aa

407

814

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 77-175 aa PF00954 S_locus_glycop 208-316 aa PF08276 PAN_2 337-403 aa PF00069 Pkinase 496-696 aa PF07714 PK_Tyr_Ser-Thr 497-766 aa

XP_057790573.1

216 aa

108

216

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 2-168 aa PF00069 Pkinase 3-100 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790572.1`	Pfam	`PF01453`	B_lectin	Repeat	77	175	3.3e-29	102.1	D-mannose binding lectin
`XP_057790572.1`	Pfam	`PF00954`	S_locus_glycop	Domain	208	316	7.6e-20	72.2	S-locus glycoprotein domain
`XP_057790572.1`	Pfam	`PF08276`	PAN_2	Domain	337	403	2.2e-19	70.0	PAN-like domain
`XP_057790572.1`	Pfam	`PF00069`	Pkinase	Domain	496	696	4e-43	148.4	Protein kinase domain
`XP_057790572.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	497	766	1.1e-46	160.0	Protein tyrosine and serine/threonine kinase
`XP_057790573.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	2	168	2.6e-25	89.9	Protein tyrosine and serine/threonine kinase
`XP_057790573.1`	Pfam	`PF00069`	Pkinase	Domain	3	100	1.4e-25	90.9	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934589.1
ATGGCGCTCTTCCTTTTCACTACAATCCTCTGCTCCCTGCTACAATCCATCCCCTTACAAAGTTCAACTGTTGGAGCAGTTGATGATCACATACTTTTCCCAAATCTAACACTTGTTCTTGGGCAGACTCTCATTTCTCAAAACCAAATTTTTGAAATGGGTTTCTTCTCGCCTGGAAAATCTTCAAACAGATTCTTGGGAATATGGTACAAGAGCACACCACAAGTTGTAGTCTGGGTTGCAAACAGAAACCATCCCAT...

XM_057934590.1
AGTTCAGAAATGAAGTTATGGTAATTGCAAAACTTCAACATAGAAACCTTGTCAGACTTTTAGGATGTTGCATTGAAGAAGAGGAAAGGATACTGATCTATGAATACCTACAGAACAGAAGTCTTGATCTCTTTGTTTTTGTGGGAGAACACTATTGACATGGCCTAAGCGTTATGACATTATCATGGGAATTGCAAGGGGACTGCTATATCTCCATCATGATTCCAGATTAAAGATTATTCACAGGGATCTCAAAACGA...

CDS

2 records

下载 CDS FASTA

LOC131007664
ATGGCGCTCTTCCTTTTCACTACAATCCTCTGCTCCCTGCTACAATCCATCCCCTTACAAAGTTCAACTGTTGGAGCAGTTGATGATCACATACTTTTCCCAAATCTAACACTTGTTCTTGGGCAGACTCTCATTTCTCAAAACCAAATTTTTGAAATGGGTTTCTTCTCGCCTGGAAAATCTTCAAACAGATTCTTGGGAATATGGTACAAGAGCACACCACAAGTTGTAGTCTGGGTTGCAAACAGAAACCATCCCAT...

LOC131007664
ATGGGAATTGCAAGGGGACTGCTATATCTCCATCATGATTCCAGATTAAAGATTATTCACAGGGATCTCAAAACGAGCAATATTTTACTAGACGGACCTTTAACTCCAAAAATATCAGATTTCGGCTTAGCAAGAATATTTGAAGAGGATCAATCTCTTGCTAGAACAAAAAGAGTCATTGGGACATTTGGATATATGGCTCCCGAATATGCAATGGATGGAAAATTCTCGGTGAAATCTGACATCTTCAGTCTTGGAGT...

Protein

2 records

下载 Protein FASTA

XP_057790572.1
MALFLFTTILCSLLQSIPLQSSTVGAVDDHILFPNLTLVLGQTLISQNQIFEMGFFSPGKSSNRFLGIWYKSTPQVVVWVANRNHPITASQPPLFMISGNGSLVISSGKSIIWSASSSEVASNPFLELLDSGNLVLVDKTRTVWQSFDYPTDTMLPGMILVDDVHAGVERNLTSWTSPDDPSPGDFVHKIQNRGLADLVTLRGESKRYRLGQWNGQYYGGGQRFPSAIYKPELIFRQEKLISVGEPYDSSLLVRTILDTS...

XP_057790573.1
MGIARGLLYLHHDSRLKIIHRDLKTSNILLDGPLTPKISDFGLARIFEEDQSLARTKRVIGTFGYMAPEYAMDGKFSVKSDIFSLGVVLLEIISGKKNRGYGESDHYLNLLGHAWLLWKENKILELMDECLNDTFEECEVKRCMQVGLLCVQKFAEDRPNMSSVVSMLGSEGAVLAEPKEPGFFMERSSSPLGSSASPSYIESENETITITELEAR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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