当前解析结果
SmilChr02G001483| 统一新 Gene ID | SmilChr02G001483 |
|---|---|
| 名称 | SmilChr02G001483 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 27807831 - 27811512 / - |
| NCBI Gene ID | LOC131007656 |
|---|---|
| GeneID | 131007656 |
| locus_tag | - |
| NCBI Name | LOC131007656 |
| 原始查询 | SmilChr02G001483 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=45.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os03g0556600- identity=41.3; qcov=1.02; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007656 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790562.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790562.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790562.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790562.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790562.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:27808073 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | B107,D3 |
Chr2:27808073 |
CA |
C |
1bp_deletion | CDS_variant | 2 | B107,D3 |
Chr2:27808078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B75,C10,C45 |
Chr2:27808098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr2:27808101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B58 |
Chr2:27808119 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B40 |
Chr2:27808119 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B40 |
Chr2:27808243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr2:27808476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B118,B13,C71 |
Chr2:27808788 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C39 |
Chr2:27808788 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C39 |
Chr2:27809164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C29,C6,C64,C74,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790562.1PF01453
B_lectin 80-181 aa
PF00954
S_locus_glycop 213-322 aa
PF08276
PAN_2 344-410 aa
PF00069
Pkinase 510-710 aa
PF07714
PK_Tyr_Ser-Thr 511-780 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790562.1 |
Pfam | PF01453 |
B_lectin | Repeat | 80 | 181 | 2.4e-32 | 112.2 | D-mannose binding lectin |
XP_057790562.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 213 | 322 | 1.2e-18 | 68.4 | S-locus glycoprotein domain |
XP_057790562.1 |
Pfam | PF08276 |
PAN_2 | Domain | 344 | 410 | 4.9e-19 | 68.9 | PAN-like domain |
XP_057790562.1 |
Pfam | PF00069 |
Pkinase | Domain | 510 | 710 | 1.9e-44 | 152.8 | Protein kinase domain |
XP_057790562.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 511 | 780 | 4.7e-47 | 161.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。