Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001490`

染色体: Chr02 坐标: 27864450-27867843 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001490`
名称	SmilChr02G001490
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	27864450 - 27867843 / `-`

ID 对照

NCBI Gene ID	`LOC131007674`
GeneID	`131007674`
locus_tag	`-`
NCBI Name	`LOC131007674`
原始查询	`SmilChr02G001490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G21380` (RK3) receptor kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:827890] identity=45.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0556600` - identity=44.6; qcov=1.08; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131007674

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790588.1`
2	Nucleus	细胞核	0.00000	`XP_057790588.1`
3	Chromosome	染色体	0.00000	`XP_057790588.1`
4	Centromere	着丝粒	0.00000	`XP_057790588.1`
5	Chromatin	染色质	0.00000	`XP_057790588.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:27864703`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B46
`Chr2:27864703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:27864779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:27864888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B26,B46,D3
`Chr2:27864906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B14,B78,D10
`Chr2:27865013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr2:27865384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,B82
`Chr2:27865443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr2:27865611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr2:27865635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,B93,C45
`Chr2:27865650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B26,D3
`Chr2:27865653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B26,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790588.1

804 aa

402

804

B_lectin

S_locus_glycop

PAN_2

PK_Tyr_Ser-Thr

Pkinase

PF01453 B_lectin 70-171 aa PF00954 S_locus_glycop 203-310 aa PF08276 PAN_2 331-397 aa PF07714 PK_Tyr_Ser-Thr 495-694 aa PF00069 Pkinase 496-693 aa

XP_057790589.1

803 aa

402

803

B_lectin

S_locus_glycop

PAN_2

PK_Tyr_Ser-Thr

Pkinase

PF01453 B_lectin 70-171 aa PF00954 S_locus_glycop 203-310 aa PF08276 PAN_2 331-397 aa PF07714 PK_Tyr_Ser-Thr 494-693 aa PF00069 Pkinase 495-692 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790588.1`	Pfam	`PF01453`	B_lectin	Repeat	70	171	6e-32	111.0	D-mannose binding lectin
`XP_057790588.1`	Pfam	`PF00954`	S_locus_glycop	Domain	203	310	1.6e-24	87.3	S-locus glycoprotein domain
`XP_057790588.1`	Pfam	`PF08276`	PAN_2	Domain	331	397	2.4e-17	63.5	PAN-like domain
`XP_057790588.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	495	694	1.3e-44	153.2	Protein tyrosine and serine/threonine kinase
`XP_057790588.1`	Pfam	`PF00069`	Pkinase	Domain	496	693	5e-45	154.7	Protein kinase domain
`XP_057790589.1`	Pfam	`PF01453`	B_lectin	Repeat	70	171	6e-32	111.0	D-mannose binding lectin
`XP_057790589.1`	Pfam	`PF00954`	S_locus_glycop	Domain	203	310	1.6e-24	87.3	S-locus glycoprotein domain
`XP_057790589.1`	Pfam	`PF08276`	PAN_2	Domain	331	397	2.3e-17	63.5	PAN-like domain
`XP_057790589.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	494	693	1.3e-44	153.2	Protein tyrosine and serine/threonine kinase
`XP_057790589.1`	Pfam	`PF00069`	Pkinase	Domain	495	692	5e-45	154.7	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934606.1
TTTCTAACTAAATCCATTTTGAAGCTACATTTCATTTTGTATTTTGCAAGTGTCCCTGAATAAATAAATAAAAAAGATCACTAATTCTAGCTTGGTATTGACGAAAGGAGGATCTCATGTTCAACAGAATCCTCTTCAACCTGTTTCTGTTCGTCACCTTTCTGAAATTCAGTGATGCAGCAGACACTCTTTTTCCAAATGAAACAATCGGTGTTGGGCAGACTTTGGTTTCCCAAAACCAAGTTTTCGAGGTCGGTTTC...

XM_057934605.1
TTTTGAAGCTACATTTCATTTTGTATTTTGCAAGTGTCCCTGAATAAATAAATAAAAAAGATCACTAATTCTAGCTTGGTATTGACGAAAGGAGGATCTCATGTTCAACAGAATCCTCTTCAACCTGTTTCTGTTCGTCACCTTTCTGAAATTCAGTGATGCAGCAGACACTCTTTTTCCAAATGAAACAATCGGTGTTGGGCAGACTTTGGTTTCCCAAAACCAAGTTTTCGAGGTCGGTTTCTTCACGCCGGGAGCAC...

CDS

2 records

下载 CDS FASTA

LOC131007674
ATGTTCAACAGAATCCTCTTCAACCTGTTTCTGTTCGTCACCTTTCTGAAATTCAGTGATGCAGCAGACACTCTTTTTCCAAATGAAACAATCGGTGTTGGGCAGACTTTGGTTTCCCAAAACCAAGTTTTCGAGGTCGGTTTCTTCACGCCGGGAGCACCCGGGAACAGTTTCTTGGGTATGTGGTACAAAAACACACCCAAAGTTGTAATCTGGGTTGCAAACAGAAACGATCCCATCACTGATTCAGGAGTAGTCTT...

Protein

2 records

下载 Protein FASTA

XP_057790588.1
MFNRILFNLFLFVTFLKFSDAADTLFPNETIGVGQTLVSQNQVFEVGFFTPGAPGNSFLGMWYKNTPKVVIWVANRNDPITDSGVVLKISEYGNLSISTGRRVVWSGNPSGVASDPVLKLLDTGNLVVAADTTKQGYIWQSFDYPTDNWLPGMKLVDDSDSGVEKYLRSWKNLEDPSGGEFSYRIENQGLPELVVYRETTKMFRTGSWNGLYFGGLPPLPNGSVTDYSFRDERLIYVARPISSSIFSRTTLESSGLLQRY...

XP_057790589.1
MFNRILFNLFLFVTFLKFSDAADTLFPNETIGVGQTLVSQNQVFEVGFFTPGAPGNSFLGMWYKNTPKVVIWVANRNDPITDSGVVLKISEYGNLSISTGRRVVWSGNPSGVASDPVLKLLDTGNLVVAADTTKQGYIWQSFDYPTDNWLPGMKLVDDSDSGVEKYLRSWKNLEDPSGGEFSYRIENQGLPELVVYRETTKMFRTGSWNGLYFGGLPPLPNGSVTDYSFRDERLIYVARPISSSIFSRTTLESSGLLQRY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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