当前解析结果
SmilChr02G001499| 统一新 Gene ID | SmilChr02G001499 |
|---|---|
| 名称 | SmilChr02G001499 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 28037811 - 28041256 / + |
| NCBI Gene ID | LOC131007669 |
|---|---|
| GeneID | 131007669 |
| locus_tag | - |
| NCBI Name | LOC131007669 |
| 原始查询 | SmilChr02G001499 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=44.3; qcov=0.985; evalue=0; confidence=medium |
| Rice | Os04g0633200- identity=43.9; qcov=0.984; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007669 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790584.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790584.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790584.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790584.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790584.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:28037896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B69 |
Chr2:28038168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B69 |
Chr2:28038206 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A1,A21,A24,A9,B103,B124,B126,B131,B16,B20,B33,B34,B46,B5,B53,B54,B59,B71,C37,C48,C53,C60,C74,C83,C9 |
Chr2:28038283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B69,C32,C68,D11 |
Chr2:28038405 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A19,B123,B136,B17,B42,B51,B74,B87,B93,C18,C23,C3,C32,C39,C50,C65,D10 |
Chr2:28038471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C60 |
Chr2:28038483 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr2:28038487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B20,B52,C39,C60 |
Chr2:28038509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B120,B138,C40 |
Chr2:28038519 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B36,C39 |
Chr2:28038519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,C39 |
Chr2:28038553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790584.1PF01453
B_lectin 74-178 aa
PF00954
S_locus_glycop 210-318 aa
PF08276
PAN_2 339-404 aa
PF00069
Pkinase 496-704 aa
PF07714
PK_Tyr_Ser-Thr 498-737 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790584.1 |
Pfam | PF01453 |
B_lectin | Repeat | 74 | 178 | 2.8e-30 | 105.6 | D-mannose binding lectin |
XP_057790584.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 210 | 318 | 1.8e-20 | 74.2 | S-locus glycoprotein domain |
XP_057790584.1 |
Pfam | PF08276 |
PAN_2 | Domain | 339 | 404 | 2.9e-21 | 76.0 | PAN-like domain |
XP_057790584.1 |
Pfam | PF00069 |
Pkinase | Domain | 496 | 704 | 4.7e-46 | 158.0 | Protein kinase domain |
XP_057790584.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 498 | 737 | 1.5e-48 | 166.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。