当前解析结果
SmilChr02G001508| 统一新 Gene ID | SmilChr02G001508 |
|---|---|
| 名称 | SmilChr02G001508 |
| 描述 | uncharacterized SmilChr02G001508 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 28107081 - 28108787 / + |
| NCBI Gene ID | LOC131008230 |
|---|---|
| GeneID | 131008230 |
| locus_tag | - |
| NCBI Name | LOC131008230 |
| 原始查询 | SmilChr02G001508 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=weak |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=27.4; qcov=0.296; evalue=8.94e-20; confidence=weak |
| Rice | Os12g0156200- identity=20.9; qcov=0.303; evalue=9.18e-07; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF14392 (zf-CCHC_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008230 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791105.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057791105.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057791105.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057791105.1 |
| 5 | P-body | P-body | 0.40000 | XP_057791105.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:28107089 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B16 |
Chr2:28107111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B5,C55,C71,C80 |
Chr2:28107135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr2:28107139 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B79,C39,C72 |
Chr2:28107141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B25,B88,D2,D3,D9 |
Chr2:28107149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr2:28107212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,C48,C66,D2 |
Chr2:28107238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:28107239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,B4 |
Chr2:28107258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,C71 |
Chr2:28107285 |
C |
T |
EMS_canonical_SNV | stop_gained | 31 | A14,A21,A9,B1,B110,B120,B17,B2,B3,B38,B39,B55,B58,B61,B71,B77,B82,B83,B98,C13,C30,C47,C49,C53,C56,C62,C65,C67,C75,C83,D1 |
Chr2:28107330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791105.1PF14392
zf-CCHC_4 275-305 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791105.1 |
Pfam | PF14392 |
zf-CCHC_4 | Domain | 275 | 305 | 3.9e-07 | 30.3 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。