Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001518`

染色体: Chr02 坐标: 28294499-28302957 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001518`
名称	SmilChr02G001518
描述	ubiquitin carboxyl-terminal hydrolase 14
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	28294499 - 28302957 / `+`

ID 对照

NCBI Gene ID	`LOC131007675`
GeneID	`131007675`
locus_tag	`-`
NCBI Name	`LOC131007675`
原始查询	`SmilChr02G001518`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin carboxyl-terminal hydrolase 14
产物	ubiquitin carboxyl-terminal hydrolase 14
Arabidopsis	`AT3G20630` (UBP14) ubiquitin-specific protease 14 [Source:NCBI gene (formerly Entrezgene);Acc:821610] identity=72.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0177200` - identity=69; qcov=1.01; evalue=0; confidence=high
GO	GO:0004843 (cysteine-type deubiquitinase activity); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0016579 (protein deubiquitination)
KEGG	-
Pfam	PF00443 (UCH); PF00627 (UBA); PF02148 (zf-UBP); PF17807 (zf-UBP_var); PF22562 (UBA_7)
InterPro	-
eggNOG	-
NR	GeneID:131007675

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790590.1`
2	Cytoplasm	细胞质	1.00000	`XP_057790590.1`
3	Chromosome	染色体	0.00000	`XP_057790590.1`
4	Centromere	着丝粒	0.00000	`XP_057790590.1`
5	Chromatin	染色质	0.00000	`XP_057790590.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:28294797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B127,B49
`Chr2:28295245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:28295329`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B94,C42,C71,C82
`Chr2:28295404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:28295961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,D10
`Chr2:28296359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,D10
`Chr2:28298912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B94,C42,C71,C82
`Chr2:28299712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:28299718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B126,C5
`Chr2:28299814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:28300483`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B66
`Chr2:28300483`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790590.1

800 aa

400

800

zf-UBP_var

zf-UBP

UCH

UBA

UBA_7

UBA

UBA_7

PF17807 zf-UBP_var 11-74 aa PF02148 zf-UBP 180-253 aa PF00443 UCH 308-795 aa PF00627 UBA 616-652 aa PF22562 UBA_7 616-663 aa PF00627 UBA 675-711 aa PF22562 UBA_7 676-717 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790590.1`	Pfam	`PF17807`	zf-UBP_var	Domain	11	74	7.4e-23	80.8	Variant UBP zinc finger
`XP_057790590.1`	Pfam	`PF02148`	zf-UBP	Domain	180	253	2.3e-17	63.7	Zn-finger in ubiquitin-hydrolases and other protein
`XP_057790590.1`	Pfam	`PF00443`	UCH	Family	308	795	3.1e-44	152.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057790590.1`	Pfam	`PF00627`	UBA	Domain	616	652	3.1e-19	69.1	UBA/TS-N domain
`XP_057790590.1`	Pfam	`PF22562`	UBA_7	Domain	616	663	6.7e-31	106.7	UBA-like domain
`XP_057790590.1`	Pfam	`PF00627`	UBA	Domain	675	711	3.1e-19	69.1	UBA/TS-N domain
`XP_057790590.1`	Pfam	`PF22562`	UBA_7	Domain	676	717	6.7e-31	106.7	UBA-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934607.1
GGCTGAAGTCGCTATTTTTTGGTAAAGCGATAAAGCGTTAACGGATCGCTTCTTTTAAGAGAGATGACATGAGAAAACCGCTCCAACACGCCATAAAAGCTTCCCATTTGTTTTCTCTTCTCTTTCATCACTGTCTCACTCTGCCAAGACTTAGGGCAACCAGTATACACACCTATACATATATACGCAAATACGTCGGTCTATCCATCGCACTTTAAACCGGCGGCTGCGGCGAAATTGTATTAGGACATTATTTTGTA...

CDS

1 records

下载 CDS FASTA

LOC131007675
ATGGAGCTGCTCCGATCAAATCTCTCTCGTGTTCGAATTCCGGAACCTACCAATCGCATCTACAAGCAGGAATGCTGCATTTCGTTCGATACTCCGAGATCAGACGGTGGGCTGTTTGTAGATATGAATTCATTTCTTGCTTTTGGCAAGGAGTTTGTGGCTTGGAACTATAGGAAGAGTGGAAATCCCGTTTATTTGCACATCAAAGAAACAAAAAAGCCAGTTTCCGAAGACAGACCATCGAAGAAACCAACACTTCT...

Protein

1 records

下载 Protein FASTA

XP_057790590.1
MELLRSNLSRVRIPEPTNRIYKQECCISFDTPRSDGGLFVDMNSFLAFGKEFVAWNYRKSGNPVYLHIKETKKPVSEDRPSKKPTLLAIGVEGGFDNNDPEYEQSYEIVILPDYVNLPFPSVDLPEKVRLAVDAVIMNVGAEKKEQVAVWTADTKHVSKHALELKQLDNGVIVPPSSWKCEKCDKRENLWLNLTDGSIHCGRRNWDGTGGNDHAVNHYRATGYPLAVKLGTITADLEAADVFSYAEDESVVDPLLAQHLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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