Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001530`

染色体: Chr02 坐标: 28555786-28558459 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001530`
名称	SmilChr02G001530
描述	vesicle-associated protein 4-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	28555786 - 28558459 / `+`

ID 对照

NCBI Gene ID	`LOC131007744`
GeneID	`131007744`
locus_tag	`-`
NCBI Name	`LOC131007744`
原始查询	`SmilChr02G001530`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vesicle-associated protein 4-1
产物	vesicle-associated protein 4-1
Arabidopsis	`AT5G54110` (MAMI) membrane-associated mannitol-induced [Source:NCBI gene (formerly Entrezgene);Acc:835498] identity=66.9; qcov=1.01; evalue=4.41e-110; confidence=high
Rice	`Os07g0558800` - identity=58.8; qcov=1.09; evalue=1.88e-93; confidence=high
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0005886 (plasma membrane); GO:0061817 (GO:0061817); GO:0090158 (endoplasmic reticulum membrane organization)
KEGG	-
Pfam	PF00635 (Motile_Sperm)
InterPro	-
eggNOG	-
NR	GeneID:131007744

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790632.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057790631.1`
3	Cytosol	细胞质基质	0.40000	`XP_057790632.1`
4	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057790631.1`
5	Nucleus	细胞核	0.00000	`XP_057790632.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:28556002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B84,C43,C58
`Chr2:28556068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B42,B43,C10,C3,C50
`Chr2:28556076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,C81
`Chr2:28556136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr2:28556153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B84,C43,C58
`Chr2:28556184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:28556501`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C9
`Chr2:28556501`	`C`	`CA`	1bp_insertion	CDS_variant	1	C9
`Chr2:28557032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,C71
`Chr2:28557887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:28557943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B84,C43,C58
`Chr2:28557961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,C42,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790631.1

299 aa

150

299

Motile_Sperm

PF00635 Motile_Sperm 75-180 aa

XP_057790632.1

260 aa

130

260

Motile_Sperm

PF00635 Motile_Sperm 75-180 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790631.1`	Pfam	`PF00635`	Motile_Sperm	Domain	75	180	6.1e-23	81.5	MSP (Major sperm protein) domain
`XP_057790632.1`	Pfam	`PF00635`	Motile_Sperm	Domain	75	180	4.4e-23	82.0	MSP (Major sperm protein) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934649.1
GCATCTGACCTATTCGGTAATGAATAGTTTTTTATTAGTCGTAAAAGGGAAAATAAACAAACTTTTGAGACGCTATATAAATGCTCATCCTTGACTTTTCTCCAAACAAACACAACTTCGCAATTCAGTCAACTGCATATTCCACTCTCAAATCGGAACTCCAAACGTAAATCCGTCTGCGAATTGCGGTTGATTTTGTCGCGAATGGCCATAGCTGGCGATCACCAGCACCACCGCCACAAGAAGTGGCGGATTTGCCC...

XM_057934648.1
AAATAAACAAACTTTTGAGACGCTATATAAATGCTCATCCTTGACTTTTCTCCAAACAAACACAACTTCGCAATTCAGTCAACTGCATATTCCACTCTCAAATCGGAACTCCAAACGTAAATCCGTCTGCGAATTGCGGTTGATTTTGTCGCGAATGGCCATAGCTGGCGATCACCAGCACCACCGCCACAAGAAGTGGCGGATTTGCCCGTTCTGGCAGTCAGGGCCGGCGCCTTCTTCGTCTCCATCTTCGACTCAGA...

CDS

2 records

下载 CDS FASTA

LOC131007744
ATGGCCATAGCTGGCGATCACCAGCACCACCGCCACAAGAAGTGGCGGATTTGCCCGTTCTGGCAGTCAGGGCCGGCGCCTTCTTCGTCTCCATCTTCGACTCAGAATCTTCAAAGTCAATCACAGAATCAGAGTCACCAAAACGCCGTCGTTGCCTCCAACAGCCGCTCTTCCTCCACGGTCTCCTCTGTAGCCAGATCGCTCCTCCCTGGACGGCGGAGGCTCCGCCTCGATCCTTCCAACAACCTTTACTTCCCCTA...

Protein

2 records

下载 Protein FASTA

XP_057790631.1
MAIAGDHQHHRHKKWRICPFWQSGPAPSSSPSSTQNLQSQSQNQSHQNAVVASNSRSSSTVSSVARSLLPGRRRLRLDPSNNLYFPYEPGKQGRSAVRIKNSSKSHVAFKFQTTAPKSCYMRPPGGILAPGGSLIATVFKFMELPENNEKNQKRKAKFKIMSLKVKEGTDYVPELFDEQRDEVIVERVLQVVFLDPERPSPALEKLKRQLAEADAALETRKKPPADAGPKVIGEGLVIDEWVSFYCLHMLPTMRINFTYH...

XP_057790632.1
MAIAGDHQHHRHKKWRICPFWQSGPAPSSSPSSTQNLQSQSQNQSHQNAVVASNSRSSSTVSSVARSLLPGRRRLRLDPSNNLYFPYEPGKQGRSAVRIKNSSKSHVAFKFQTTAPKSCYMRPPGGILAPGGSLIATVFKFMELPENNEKNQKRKAKFKIMSLKVKEGTDYVPELFDEQRDEVIVERVLQVVFLDPERPSPALEKLKRQLAEADAALETRKKPPADAGPKVIGEGLVIDEWKERREKYLARQQVEAVDSV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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