Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001566`

染色体: Chr02 坐标: 29033101-29044809 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001566`
名称	SmilChr02G001566
描述	trafficking protein particle complex II-specific subunit 130 homolog
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	29033101 - 29044809 / `-`

ID 对照

NCBI Gene ID	`LOC131013226`
GeneID	`131013226`
locus_tag	`-`
NCBI Name	`LOC131013226`
原始查询	`SmilChr02G001566`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trafficking protein particle complex II-specific subunit 130 homolog
产物	trafficking protein particle complex II-specific subunit 130 homolog
Arabidopsis	`AT5G54440` (CLUB) CLUB [Source:NCBI gene (formerly Entrezgene);Acc:835532] identity=72.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os12g0554400` (TRS130) - identity=67.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0034498 (early endosome to Golgi transport); GO:1990071 (TRAPPII protein complex)
KEGG	-
Pfam	PF11817 (Foie-gras_1); PF12584 (TRAPPC10_C); PF23036 (TRAPPC10_1st); PF28381 (Ig_TRS130); PF30303 (TRAPPC10-Trs130_NTS); PF30304 (Ig_TRAPPC10_1st)
InterPro	-
eggNOG	-
NR	GeneID:131013226

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057797284.1`
2	Nucleus	细胞核	0.00000	`XP_057797284.1`
3	Chromosome	染色体	0.00000	`XP_057797284.1`
4	Centromere	着丝粒	0.00000	`XP_057797284.1`
5	Chromatin	染色质	0.00000	`XP_057797284.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:29033398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,B7,B84
`Chr2:29033472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:29033475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,B64
`Chr2:29033541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:29034170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C10
`Chr2:29034920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:29035910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:29035913`	`ACG`	`A`	2bp_deletion	frameshift_variant	1	D10
`Chr2:29035913`	`ACG`	`A`	2bp_deletion	CDS_variant	1	D10
`Chr2:29035916`	`AT`	`A`	1bp_deletion	frameshift_variant	1	D10
`Chr2:29035916`	`AT`	`A`	1bp_deletion	CDS_variant	1	D10
`Chr2:29035991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797284.1

1254 aa

627

1254

TRAPPC10_1st

TRAPPC10-Trs130_NTS

Foie-gras_1

Ig_TRS130

Ig_TRAPPC10_1st

TRAPPC10_C

PF23036 TRAPPC10_1st 18-206 aa PF30303 TRAPPC10-Trs130_NTS 312-676 aa PF11817 Foie-gras_1 571-654 aa PF28381 Ig_TRS130 684-817 aa PF30304 Ig_TRAPPC10_1st 733-788 aa PF12584 TRAPPC10_C 1137-1218 aa

XP_057797285.1

1252 aa

626

1252

TRAPPC10_1st

TRAPPC10-Trs130_NTS

Foie-gras_1

Ig_TRS130

Ig_TRAPPC10_1st

TRAPPC10_C

PF23036 TRAPPC10_1st 18-206 aa PF30303 TRAPPC10-Trs130_NTS 312-674 aa PF11817 Foie-gras_1 569-652 aa PF28381 Ig_TRS130 682-815 aa PF30304 Ig_TRAPPC10_1st 731-786 aa PF12584 TRAPPC10_C 1135-1216 aa

XP_057797286.1

1250 aa

625

1250

TRAPPC10_1st

TRAPPC10-Trs130_NTS

Foie-gras_1

Ig_TRS130

Ig_TRAPPC10_1st

TRAPPC10_C

PF23036 TRAPPC10_1st 18-206 aa PF30303 TRAPPC10-Trs130_NTS 308-672 aa PF11817 Foie-gras_1 567-650 aa PF28381 Ig_TRS130 680-813 aa PF30304 Ig_TRAPPC10_1st 729-784 aa PF12584 TRAPPC10_C 1133-1214 aa

XP_057797287.1

1248 aa

624

1248

TRAPPC10_1st

TRAPPC10-Trs130_NTS

Foie-gras_1

Ig_TRS130

Ig_TRAPPC10_1st

TRAPPC10_C

PF23036 TRAPPC10_1st 18-206 aa PF30303 TRAPPC10-Trs130_NTS 308-670 aa PF11817 Foie-gras_1 565-648 aa PF28381 Ig_TRS130 678-811 aa PF30304 Ig_TRAPPC10_1st 727-782 aa PF12584 TRAPPC10_C 1131-1212 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797284.1`	Pfam	`PF23036`	TRAPPC10_1st	Domain	18	206	1.4e-22	80.7	Trafficking protein particle complex subunit 10-like, N-terminal
`XP_057797284.1`	Pfam	`PF30303`	TRAPPC10-Trs130_NTS	Repeat	312	676	2e-208	692.6	TRAPPC10/Trs130, NTS-like domain
`XP_057797284.1`	Pfam	`PF11817`	Foie-gras_1	Repeat	571	654	1.5e-05	25.5	Foie gras liver health family 1
`XP_057797284.1`	Pfam	`PF28381`	Ig_TRS130	Domain	684	817	1.3e-65	219.9	TRS130-like, immunoglobulin-like domain
`XP_057797284.1`	Pfam	`PF30304`	Ig_TRAPPC10_1st	Domain	733	788	2e-06	28.6	TRAPPC10, first Ig-like domain
`XP_057797284.1`	Pfam	`PF12584`	TRAPPC10_C	Domain	1137	1218	1.8e-08	35.1	TRAPPC10 C-terminal domain
`XP_057797285.1`	Pfam	`PF23036`	TRAPPC10_1st	Domain	18	206	1.4e-22	80.7	Trafficking protein particle complex subunit 10-like, N-terminal
`XP_057797285.1`	Pfam	`PF30303`	TRAPPC10-Trs130_NTS	Repeat	312	674	3.1e-208	692.0	TRAPPC10/Trs130, NTS-like domain
`XP_057797285.1`	Pfam	`PF11817`	Foie-gras_1	Repeat	569	652	1.5e-05	25.5	Foie gras liver health family 1
`XP_057797285.1`	Pfam	`PF28381`	Ig_TRS130	Domain	682	815	1.3e-65	219.9	TRS130-like, immunoglobulin-like domain
`XP_057797285.1`	Pfam	`PF30304`	Ig_TRAPPC10_1st	Domain	731	786	2.1e-06	28.5	TRAPPC10, first Ig-like domain
`XP_057797285.1`	Pfam	`PF12584`	TRAPPC10_C	Domain	1135	1216	1.8e-08	35.1	TRAPPC10 C-terminal domain
`XP_057797286.1`	Pfam	`PF23036`	TRAPPC10_1st	Domain	18	206	1.4e-22	80.7	Trafficking protein particle complex subunit 10-like, N-terminal
`XP_057797286.1`	Pfam	`PF30303`	TRAPPC10-Trs130_NTS	Repeat	308	672	1.9e-208	692.7	TRAPPC10/Trs130, NTS-like domain
`XP_057797286.1`	Pfam	`PF11817`	Foie-gras_1	Repeat	567	650	1.5e-05	25.5	Foie gras liver health family 1
`XP_057797286.1`	Pfam	`PF28381`	Ig_TRS130	Domain	680	813	1.4e-65	219.8	TRS130-like, immunoglobulin-like domain
`XP_057797286.1`	Pfam	`PF30304`	Ig_TRAPPC10_1st	Domain	729	784	2e-06	28.6	TRAPPC10, first Ig-like domain
`XP_057797286.1`	Pfam	`PF12584`	TRAPPC10_C	Domain	1133	1214	1.8e-08	35.1	TRAPPC10 C-terminal domain
`XP_057797287.1`	Pfam	`PF23036`	TRAPPC10_1st	Domain	18	206	1.4e-22	80.7	Trafficking protein particle complex subunit 10-like, N-terminal
`XP_057797287.1`	Pfam	`PF30303`	TRAPPC10-Trs130_NTS	Repeat	308	670	3.1e-208	692.0	TRAPPC10/Trs130, NTS-like domain
`XP_057797287.1`	Pfam	`PF11817`	Foie-gras_1	Repeat	565	648	1.5e-05	25.5	Foie gras liver health family 1
`XP_057797287.1`	Pfam	`PF28381`	Ig_TRS130	Domain	678	811	1.4e-65	219.8	TRS130-like, immunoglobulin-like domain
`XP_057797287.1`	Pfam	`PF30304`	Ig_TRAPPC10_1st	Domain	727	782	2.1e-06	28.5	TRAPPC10, first Ig-like domain
`XP_057797287.1`	Pfam	`PF12584`	TRAPPC10_C	Domain	1131	1212	1.8e-08	35.1	TRAPPC10 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057941302.1
AGTTTTGATTATTTTCAATGAAAAAGCGTTGTGTGTGAGCGAGTTAGATTAATGAGGCCGCACGACAAAATTAAACGTGATTTCCCCAAGAAAGAAAATCCATGGATCCCAACTTGGAGCGGAACAAGCAAATCTGCTGACCGCGGTTAAATCGGTAGCTGCAAAAGAGTTTCCCCTCTCTAACTGTGCGCACGCTTCCAATACTGTCGCATTGTCACTCTCCGATCTCCACTCACTCATGCTCTTCGCAGATCGCCGAA...

XM_057941301.1
AGTTTTGATTATTTTCAATGAAAAAGCGTTGTGTGTGAGCGAGTTAGATTAATGAGGCCGCACGACAAAATTAAACGTGATTTCCCCAAGAAAGAAAATCCATGGATCCCAACTTGGAGCGGAACAAGCAAATCTGCTGACCGCGGTTAAATCGGTAGCTGCAAAAGAGTTTCCCCTCTCTAACTGTGCGCACGCTTCCAATACTGTCGCATTGTCACTCTCCGATCTCCACTCACTCATGCTCTTCGCAGATCGCCGAA...

CDS

4 records

下载 CDS FASTA

LOC131013226
ATGGCCAGTTTTTTACCTCAGTTTCAGAGTATTAAATCATCATTCGATCACATCGTTCTCTCCGTTGAGGATGTAAGTGATTTGTGGCCTACCGTCAAGAAGGGCTTTGAAGAGAGGTTGCCCTTCAAAAGGGCTTCTCTGAACAACAAGACCCGCAATCCTGTGCTTGTTGATGAACTACCTGCTGAATTTATACTGACAACGGATGCAAGACTACGTAGTCGGTTTCCTCAAGAGCAATCACTGTTTTGGTTCCGGGA...

Protein

4 records

下载 Protein FASTA

XP_057797284.1
MASFLPQFQSIKSSFDHIVLSVEDVSDLWPTVKKGFEERLPFKRASLNNKTRNPVLVDELPAEFILTTDARLRSRFPQEQSLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNEEREWFIVFVSKAPAHNDQASKMAKKVYAKLEVDFSSKKRERCCKLDIHGPDPNFWEDLEAKVMECIRNTLDKRIQFYEEEIRKLSEQRFMPVWNFCNFFILKESLAFMFEIAHLHEDALREYDELELCYLETVNMAGKQRDF...

XP_057797285.1
MASFLPQFQSIKSSFDHIVLSVEDVSDLWPTVKKGFEERLPFKRASLNNKTRNPVLVDELPAEFILTTDARLRSRFPQEQSLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNEEREWFIVFVSKAPAHNDQASKMAKKVYAKLEVDFSSKKRERCCKLDIHGPDPNFWEDLEAKVMECIRNTLDKRIQFYEEEIRKLSEQRFMPVWNFCNFFILKESLAFMFEIAHLHEDALREYDELELCYLETVNMAGKQRDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器