当前解析结果
SmilChr02G001567| 统一新 Gene ID | SmilChr02G001567 |
|---|---|
| 名称 | SmilChr02G001567 |
| 描述 | uncharacterized SmilChr02G001567 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 29072651 - 29074053 / + |
| NCBI Gene ID | LOC131008250 |
|---|---|
| GeneID | 131008250 |
| locus_tag | - |
| NCBI Name | LOC131008250 |
| 原始查询 | SmilChr02G001567 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=28.6; qcov=0.378; evalue=1.01e-23; confidence=low |
| Rice | Os12g0156200- identity=21.4; qcov=0.401; evalue=9.83e-08; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008250 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791123.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057791123.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057791123.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057791123.1 |
| 5 | Nucleus | 细胞核 | 0.20000 | XP_057791123.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:29072682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C42 |
Chr2:29072685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C42 |
Chr2:29072890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B73,C2,C41,C85,C9 |
Chr2:29072896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:29072910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,C16,C33 |
Chr2:29072920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr2:29072921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B78 |
Chr2:29072936 |
TCA |
T |
2bp_deletion | frameshift_variant | 8 | B126,B13,B37,B47,B5,B73,C3,D1 |
Chr2:29072938 |
A |
AAG |
2bp_insertion | frameshift_variant | 22 | B104,B106,B132,B139,B20,B28,B41,B48,B60,B64,B78,B81,B86,B94,C16,C2,C41,C43,C47,C80,C85,C9 |
Chr2:29072939 |
A |
AG |
1bp_insertion | frameshift_variant | 4 | B139,B41,C19,C33 |
Chr2:29072939 |
A |
AG |
1bp_insertion | CDS_variant | 4 | B139,B41,C19,C33 |
Chr2:29072942 |
G |
GAA |
2bp_insertion | frameshift_variant | 8 | B126,B13,B37,B47,B5,B73,C3,D1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。