Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001567

染色体: Chr02 坐标: 29072651-29074053 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001567
名称SmilChr02G001567
描述uncharacterized SmilChr02G001567
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向29072651 - 29074053 / +

ID 对照

NCBI Gene IDLOC131008250
GeneID131008250
locus_tag-
NCBI NameLOC131008250
原始查询SmilChr02G001567

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low
产物zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low
ArabidopsisAT2G01050 (AT2G01050)
zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]
identity=28.6; qcov=0.378; evalue=1.01e-23; confidence=low
RiceOs12g0156200
-
identity=21.4; qcov=0.401; evalue=9.83e-08; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131008250

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057791123.1
2 Cytosol 细胞质基质 0.60000 XP_057791123.1
3 Cytoplasmic granule 细胞质颗粒 0.40000 XP_057791123.1
4 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.40000 XP_057791123.1
5 Nucleus 细胞核 0.20000 XP_057791123.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:29072682 C T EMS_canonical_SNV CDS_variant 2 B98,C42
Chr2:29072685 C T EMS_canonical_SNV CDS_variant 2 B98,C42
Chr2:29072890 C T EMS_canonical_SNV CDS_variant 5 B73,C2,C41,C85,C9
Chr2:29072896 C T EMS_canonical_SNV CDS_variant 1 C81
Chr2:29072910 C T EMS_canonical_SNV CDS_variant 3 B41,C16,C33
Chr2:29072920 C T EMS_canonical_SNV CDS_variant 1 B5
Chr2:29072921 G A EMS_canonical_SNV CDS_variant 2 B104,B78
Chr2:29072936 TCA T 2bp_deletion frameshift_variant 8 B126,B13,B37,B47,B5,B73,C3,D1
Chr2:29072938 A AAG 2bp_insertion frameshift_variant 22 B104,B106,B132,B139,B20,B28,B41,B48,B60,B64,B78,B81,B86,B94,C16,C2,C41,C43,C47,C80,C85,C9
Chr2:29072939 A AG 1bp_insertion frameshift_variant 4 B139,B41,C19,C33
Chr2:29072939 A AG 1bp_insertion CDS_variant 4 B139,B41,C19,C33
Chr2:29072942 G GAA 2bp_insertion frameshift_variant 8 B126,B13,B37,B47,B5,B73,C3,D1

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057935140.1
ATGGCTAGGGTTTCTCAGGATACTACGACAACTGCTGTAGGAACTTCGGCGACGGAGCCTAACCGGCCGAAGCACACTACTTACGCGTCTTCCTTAAGAAATAAGCAGATTGAACGAAAACCTAACGTGCTCGTTCATAGATTCACAGCCCTCCAACCTGATTTTTCTGGTCGTGTTCTTGTGGGAAAGGGCGAGAAACCACGTCTTCTGCTGGATCTCAAAAGAGAATTGAATGAGATATGGAAAGTTGAGAAAGAATG...

CDS

1 records

下载 CDS FASTA
LOC131008250
ATGGCTAGGGTTTCTCAGGATACTACGACAACTGCTGTAGGAACTTCGGCGACGGAGCCTAACCGGCCGAAGCACACTACTTACGCGTCTTCCTTAAGAAATAAGCAGATTGAACGAAAACCTAACGTGCTCGTTCATAGATTCACAGCCCTCCAACCTGATTTTTCTGGTCGTGTTCTTGTGGGAAAGGGCGAGAAACCACGTCTTCTGCTGGATCTCAAAAGAGAATTGAATGAGATATGGAAAGTTGAGAAAGAATG...

Protein

1 records

下载 Protein FASTA
XP_057791123.1
MARVSQDTTTTAVGTSATEPNRPKHTTYASSLRNKQIERKPNVLVHRFTALQPDFSGRVLVGKGEKPRLLLDLKRELNEIWKVEKEWQLIPMGKSFYTIKFATAEDTAAAQTNTAWDLSFGTIRLRQWVRFFDPYMEISSLCEVWMRIYHLPLEFWTLDVITGIGRALGTPIRVDGASTHGAMGNYARILLEIDLSRPLPETLLVDGDERSFYVEFDFEQIPAYCTKCKITGHSIDKCNKIKQKGNNKEGEAQQNLVTKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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