当前解析结果
SmilChr02G001571| 统一新 Gene ID | SmilChr02G001571 |
|---|---|
| 名称 | SmilChr02G001571 |
| 描述 | uncharacterized SmilChr02G001571 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 29132273 - 29135783 / + |
| NCBI Gene ID | LOC131008251 |
|---|---|
| GeneID | 131008251 |
| locus_tag | - |
| NCBI Name | LOC131008251 |
| 原始查询 | SmilChr02G001571 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| 产物 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=27.6; qcov=0.909; evalue=5.26e-39; confidence=low |
| Rice | Os06g0484800- identity=24.5; qcov=0.8; evalue=3.77e-35; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008251 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791125.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057791125.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057791125.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791125.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791125.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:29132283 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B41,B49,C12 |
Chr2:29132283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,B49,C12 |
Chr2:29132293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:29132301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B64,D11 |
Chr2:29132330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr2:29132334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B65,C17,D10,D6 |
Chr2:29132335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B67,B89,C71 |
Chr2:29132357 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A4,A9,B123,B36,B80,B99,C12,C14,D5,D6 |
Chr2:29132361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C28,C73 |
Chr2:29132377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:29132396 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B12,B3,B40,B78,B91,C36,C80 |
Chr2:29132402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。