当前解析结果
SmilChr02G001596| 统一新 Gene ID | SmilChr02G001596 |
|---|---|
| 名称 | SmilChr02G001596 |
| 描述 | beta-glucosidase 18-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 29788953 - 29792237 / + |
| NCBI Gene ID | LOC131013250 |
|---|---|
| GeneID | 131013250 |
| locus_tag | - |
| NCBI Name | LOC131013250 |
| 原始查询 | SmilChr02G001596 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-glucosidase 18-like |
| 产物 | beta-glucosidase 18-like |
| Arabidopsis | AT4G21760 (BGLU47)beta-glucosidase 47 [Source:NCBI gene (formerly Entrezgene);Acc:828264] identity=49.6; qcov=0.891; evalue=1.82e-180; confidence=high |
| Rice | Os04g0513900 (Os4bglu18)- identity=53.5; qcov=0.91; evalue=0; confidence=high |
| GO | GO:0005975 (carbohydrate metabolic process); GO:0008422 (beta-glucosidase activity) |
| KEGG | smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00232 (Glyco_hydro_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013250 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057797302.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057797302.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057797302.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797302.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797302.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:29789303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B15,B26,C1,D10,D11 |
Chr2:29789305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:29789847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,C8 |
Chr2:29790129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,C1,D10 |
Chr2:29790153 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,C59 |
Chr2:29790616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr2:29790737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:29790830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:29791013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B124,B22,C25,C30 |
Chr2:29791468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,C1,D10,D11 |
Chr2:29791783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B17,C87 |
Chr2:29791861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B131,B6,B91,C17,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797302.1PF00232
Glyco_hydro_1 36-513 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797302.1 |
Pfam | PF00232 |
Glyco_hydro_1 | Domain | 36 | 513 | 1.4e-142 | 476.2 | Glycosyl hydrolase family 1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。