Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001596

染色体: Chr02 坐标: 29788953-29792237 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001596
名称SmilChr02G001596
描述beta-glucosidase 18-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向29788953 - 29792237 / +

ID 对照

NCBI Gene IDLOC131013250
GeneID131013250
locus_tag-
NCBI NameLOC131013250
原始查询SmilChr02G001596

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述beta-glucosidase 18-like
产物beta-glucosidase 18-like
ArabidopsisAT4G21760 (BGLU47)
beta-glucosidase 47 [Source:NCBI gene (formerly Entrezgene);Acc:828264]
identity=49.6; qcov=0.891; evalue=1.82e-180; confidence=high
RiceOs04g0513900 (Os4bglu18)
-
identity=53.5; qcov=0.91; evalue=0; confidence=high
GOGO:0005975 (carbohydrate metabolic process); GO:0008422 (beta-glucosidase activity)
KEGGsmil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00232 (Glyco_hydro_1)
InterPro-
eggNOG-
NRGeneID:131013250

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 0.60000 XP_057797302.1
2 Endoplasmic reticulum 内质网 0.40000 XP_057797302.1
3 Chloroplast 叶绿体 0.20000 XP_057797302.1
4 Nucleus 细胞核 0.00000 XP_057797302.1
5 Chromosome 染色体 0.00000 XP_057797302.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:29789303 G A EMS_canonical_SNV CDS_variant 5 B15,B26,C1,D10,D11
Chr2:29789305 C T EMS_canonical_SNV CDS_variant 1 C71
Chr2:29789847 C T EMS_canonical_SNV CDS_variant 2 B100,C8
Chr2:29790129 C T EMS_canonical_SNV CDS_variant 3 B26,C1,D10
Chr2:29790153 C T EMS_canonical_SNV CDS_variant 2 B105,C59
Chr2:29790616 G A EMS_canonical_SNV CDS_variant 1 B91
Chr2:29790737 C T EMS_canonical_SNV CDS_variant 1 C71
Chr2:29790830 C T EMS_canonical_SNV CDS_variant 1 C71
Chr2:29791013 C T EMS_canonical_SNV CDS_variant 5 A16,B124,B22,C25,C30
Chr2:29791468 G A EMS_canonical_SNV CDS_variant 4 B26,C1,D10,D11
Chr2:29791783 G A EMS_canonical_SNV CDS_variant 3 B119,B17,C87
Chr2:29791861 C T EMS_canonical_SNV CDS_variant 5 B131,B6,B91,C17,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057797302.1
532 aa
N
1
266
532
Glyco_hydro_1
C
PF00232 Glyco_hydro_1 36-513 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797302.1 Pfam PF00232 Glyco_hydro_1 Domain 36 513 1.4e-142 476.2 Glycosyl hydrolase family 1

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057941319.1
GATGATACTATTAAATACTCCAAATATCCCTTTAAATTTATTAAAAAAAATCATAAATATTGCATACTTTGATAATTGAAGAAACAAAAATAATTAACTCCGACAAGAAAAAAGAAAAGCATACTTCCGCTGTTCCGCTCCAGAAAAAAATGGAATGAAATGAATAGTTACCCAGTCACTATAATCATTCAATCCATGTCCTATCCTATTTAAGTAAGCAGCTGATTCGATTTTCTTGAAGGTAGTGGCAGAAAGAAATG...

CDS

1 records

下载 CDS FASTA
LOC131013250
ATGAAGAAAACCAAACTTAAATGCTTTGTGAGTGCCACCTACTTCTTGATCGTATTCATTTCTGTAGTCAAATCCTCCATTGAAGAACAAACAGACGTCAAAAGAAGCGATTTTCCACATGGGTTTCTCTTTGGAGCTGCCACTTCCGCCTATCAAGTGGAAGGAGCATTTCATGAAGATGGGAAGAGTCTAAGCAACTGGGATGTTTTCTGCCACGTTGATGGAAATGTCGTAGATGGGAGTAATGGTGAAATAGCTGA...

Protein

1 records

下载 Protein FASTA
XP_057797302.1
MKKTKLKCFVSATYFLIVFISVVKSSIEEQTDVKRSDFPHGFLFGAATSAYQVEGAFHEDGKSLSNWDVFCHVDGNVVDGSNGEIADDHYHRFMEDIEIMESLGLTAYRFSISWSRVLPRGRLGEINQIGIDFYSKIIDNLLLRGIQPFVSLFHFEFPQELQERFGGWLSPLMREEYVYFAEVCFRSFADRVKYWVTFNEINLYSEFAYEKAMFPPLRCSPPFGDCASGNSDVEPLTVAHNLLLAHGEAAKLYRERFKSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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