当前解析结果
SmilChr02G001614| 统一新 Gene ID | SmilChr02G001614 |
|---|---|
| 名称 | SmilChr02G001614 |
| 描述 | uncharacterized SmilChr02G001614 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 30056418 - 30063132 / + |
| NCBI Gene ID | LOC131013263 |
|---|---|
| GeneID | 131013263 |
| locus_tag | - |
| NCBI Name | LOC131013263 |
| 原始查询 | SmilChr02G001614 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820786]; symbol=AT3G15470; hit=AT3G15470; species=arabidopsis; confidence=high |
| 产物 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820786]; symbol=AT3G15470; hit=AT3G15470; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G15470 (AT3G15470)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820786] identity=57.2; qcov=1.04; evalue=0; confidence=high |
| Rice | Os04g0678300 (OsWD40-112)- identity=53.2; qcov=0.746; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013263 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057797312.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057797312.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057797312.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057797312.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797312.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:30056844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C60 |
Chr2:30057035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr2:30057052 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B40 |
Chr2:30057052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:30057083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,C76,C9 |
Chr2:30057148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:30057223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B32,B69,B94 |
Chr2:30057276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C60 |
Chr2:30057763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B114 |
Chr2:30057771 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C60 |
Chr2:30059414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr2:30060541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797312.1PF00400
WD40 413-446 aa
PF00400
WD40 522-558 aa
PF00400
WD40 563-600 aa
PF00400
WD40 709-734 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797312.1 |
Pfam | PF00400 |
WD40 | Repeat | 413 | 446 | 5.7e-37 | 125.3 | WD domain, G-beta repeat |
XP_057797312.1 |
Pfam | PF00400 |
WD40 | Repeat | 522 | 558 | 5.7e-37 | 125.3 | WD domain, G-beta repeat |
XP_057797312.1 |
Pfam | PF00400 |
WD40 | Repeat | 563 | 600 | 5.7e-37 | 125.3 | WD domain, G-beta repeat |
XP_057797312.1 |
Pfam | PF00400 |
WD40 | Repeat | 709 | 734 | 5.7e-37 | 125.3 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。