Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001635`

染色体: Chr02 坐标: 30331034-30334010 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001635`
名称	SmilChr02G001635
描述	E3 ubiquitin-protein ligase RMA1H1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	30331034 - 30334010 / `-`

ID 对照

NCBI Gene ID	`LOC131013281`
GeneID	`131013281`
locus_tag	`-`
NCBI Name	`LOC131013281`
原始查询	`SmilChr02G001635`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase RMA1H1-like
产物	E3 ubiquitin-protein ligase RMA1H1-like
Arabidopsis	`AT4G03510` (RMA1) RING membrane-anchor 1 [Source:NCBI gene (formerly Entrezgene);Acc:825654] identity=40.4; qcov=1.02; evalue=7.15e-54; confidence=medium
Rice	`Os04g0530500` (OsRDCP1) - identity=35.8; qcov=0.95; evalue=2.16e-34; confidence=medium
GO	GO:0005783 (endoplasmic reticulum); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0044390 (ubiquitin-like protein conjugating enzyme binding); GO:0061630 (ubiquitin protein ligase activity); GO:0071712 (GO:0071712)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2)
InterPro	-
eggNOG	-
NR	GeneID:131013281

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057797328.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057797328.1`
3	Nucleus	细胞核	0.20000	`XP_057797328.1`
4	Chromosome	染色体	0.00000	`XP_057797328.1`
5	Centromere	着丝粒	0.00000	`XP_057797328.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:30331766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,C67
`Chr2:30331769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B121,B71,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797328.1

259 aa

130

259

zf-RING_2

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 44-92 aa PF13445 zf-RING_UBOX 45-89 aa PF00097 zf-C3HC4 45-91 aa

XP_057797329.1

259 aa

130

259

zf-RING_2

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 44-92 aa PF13445 zf-RING_UBOX 45-89 aa PF00097 zf-C3HC4 45-91 aa

XP_057797330.1

259 aa

130

259

zf-RING_2

zf-RING_UBOX

zf-C3HC4

PF13639 zf-RING_2 44-92 aa PF13445 zf-RING_UBOX 45-89 aa PF00097 zf-C3HC4 45-91 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797328.1`	Pfam	`PF13639`	zf-RING_2	Domain	44	92	2.9e-07	31.3	Ring finger domain
`XP_057797328.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	45	89	1.1e-07	32.5	RING-type zinc-finger
`XP_057797328.1`	Pfam	`PF00097`	zf-C3HC4	Domain	45	91	2.6e-07	31.1	Zinc finger, C3HC4 type (RING finger)
`XP_057797329.1`	Pfam	`PF13639`	zf-RING_2	Domain	44	92	2.9e-07	31.3	Ring finger domain
`XP_057797329.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	45	89	1.1e-07	32.5	RING-type zinc-finger
`XP_057797329.1`	Pfam	`PF00097`	zf-C3HC4	Domain	45	91	2.6e-07	31.1	Zinc finger, C3HC4 type (RING finger)
`XP_057797330.1`	Pfam	`PF13639`	zf-RING_2	Domain	44	92	2.9e-07	31.3	Ring finger domain
`XP_057797330.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	45	89	1.1e-07	32.5	RING-type zinc-finger
`XP_057797330.1`	Pfam	`PF00097`	zf-C3HC4	Domain	45	91	2.6e-07	31.1	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941345.1
ATTGATTGGAAAGGAGCGATTGACGGAGGGCGTGAAAGAAAGGCGCGTGGAGACACATGCTCCGGCAAATTATTATCCTCTGCTGCACGGAGCACCCGAGCCATTCCCCAATCAACACTCCAGCTCTATACATTTCAAATCGCCGAACGTTTATCCCCCTTCACTTTCTTATTTATTCATCGATTTCTCATTTCCATCAAACTGCCGATTGGTTCTCCGTTTCTCTCTCTACTATAGGAACTTCTGTATCTGCTTCTCTC...

XM_057941346.1
GGGCGTGAAAGAAAGGCGCGTGGAGACACATGCTCCGGCAAATTATTATCCTCTGCTGCACGGAGCACCCGAGCCATTCCCCAATCAACACTCCAGCTCTATACATTTCAAATCGCCGAACGTTTATCCCCCTTCACTTTCTTATTTATTCATCGATTTCTCATTTCCATCAAACTGCCGATTGGTTCTCCGTTTCTCTCTCTACTATAGGAACTTCTGTATCTGCTTCTCTCTCTACATTCTGCTCTTCGTTGATTTTG...

CDS

3 records

下载 CDS FASTA

LOC131013281
ATGGCTTATGAGCAAAGCTTTGGTGCCCCAACCATGCATTTGGGATCCGAGGGTGATGTCTCGCACAAACAAAAATGGAGTTCAGTTTCACAGTCTGCTATGATGTTGGAAAACTCAAATGGAGGCTTTGATTGCAATATATGTCTAGAGTCATGTCACGAACCTGTGGTAACTCTCTGTGGTCACCTGTACTGCTGGCCATGTATTTATAAATGGCTCCATGTTCAGAGCTCGTCGTTCGAGTCAGATGAGCGACCTAG...

Protein

3 records

下载 Protein FASTA

XP_057797328.1
MAYEQSFGAPTMHLGSEGDVSHKQKWSSVSQSAMMLENSNGGFDCNICLESCHEPVVTLCGHLYCWPCIYKWLHVQSSSFESDERPRCPVCKAFISNSSLVPLYGRGRSPSESEAKKRQLDSTVPPRPAALGLNTLLDTSASVSSDSNQQNNPNPFHQDNQTFDQQQRFPNPFGNYSSIPPPTTTSFFSPTINMVSEIVFAGMFGSSDSNMFAYPYTNSYPLIGNGSPRLRRHEVQLDKSLNRVSIFLFCCIALCLILF

XP_057797329.1
MAYEQSFGAPTMHLGSEGDVSHKQKWSSVSQSAMMLENSNGGFDCNICLESCHEPVVTLCGHLYCWPCIYKWLHVQSSSFESDERPRCPVCKAFISNSSLVPLYGRGRSPSESEAKKRQLDSTVPPRPAALGLNTLLDTSASVSSDSNQQNNPNPFHQDNQTFDQQQRFPNPFGNYSSIPPPTTTSFFSPTINMVSEIVFAGMFGSSDSNMFAYPYTNSYPLIGNGSPRLRRHEVQLDKSLNRVSIFLFCCIALCLILF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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