当前解析结果
SmilChr02G001646| 统一新 Gene ID | SmilChr02G001646 |
|---|---|
| 名称 | SmilChr02G001646 |
| 描述 | plant intracellular Ras-group-related LRR protein 6-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 30531452 - 30541404 / - |
| NCBI Gene ID | LOC131013293 |
|---|---|
| GeneID | 131013293 |
| locus_tag | - |
| NCBI Name | LOC131013293 |
| 原始查询 | SmilChr02G001646 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plant intracellular Ras-group-related LRR protein 6-like |
| 产物 | plant intracellular Ras-group-related LRR protein 6-like |
| Arabidopsis | AT3G15410 (AT3G15410)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:820780] identity=67; qcov=0.967; evalue=0; confidence=high |
| Rice | Os02g0826600 (OsIRL6)- identity=64.2; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013293 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057797345.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057797345.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057797345.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057797345.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797345.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:30531765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,C67 |
Chr2:30531775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:30531791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,B94,C72 |
Chr2:30535950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:30536016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B74,C54,C71 |
Chr2:30536698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,B98 |
Chr2:30537747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:30538462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B120,C3,C38 |
Chr2:30538915 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B137,B33,B79,C36 |
Chr2:30539112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B99 |
Chr2:30539230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C36,C47 |
Chr2:30539425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797345.1PF13855
LRR_8 66-123 aa
PF23598
LRR_14 82-203 aa
PF00560
LRR_1 89-109 aa
PF00560
LRR_1 135-156 aa
PF13855
LRR_8 181-239 aa
PF13855
LRR_8 231-285 aa
PF00560
LRR_1 296-314 aa
PF13855
LRR_8 426-481 aa
PF13855
LRR_8 520-578 aa
PF00560
LRR_1 543-562 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797345.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 66 | 123 | 3.5e-45 | 152.3 | Leucine rich repeat |
XP_057797345.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 82 | 203 | 4.5e-35 | 121.8 | Leucine-rich repeat region |
XP_057797345.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 89 | 109 | 1.8e-26 | 87.2 | Leucine Rich Repeat |
XP_057797345.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 135 | 156 | 1.8e-26 | 87.2 | Leucine Rich Repeat |
XP_057797345.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 181 | 239 | 3.5e-45 | 152.3 | Leucine rich repeat |
XP_057797345.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 231 | 285 | 3.5e-45 | 152.3 | Leucine rich repeat |
XP_057797345.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 296 | 314 | 1.8e-26 | 87.2 | Leucine Rich Repeat |
XP_057797345.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 426 | 481 | 3.5e-45 | 152.3 | Leucine rich repeat |
XP_057797345.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 520 | 578 | 3.5e-45 | 152.3 | Leucine rich repeat |
XP_057797345.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 543 | 562 | 1.8e-26 | 87.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。