当前解析结果
SmilChr02G001668| 统一新 Gene ID | SmilChr02G001668 |
|---|---|
| 名称 | SmilChr02G001668 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 30947040 - 30948221 / + |
| NCBI Gene ID | LOC131008282 |
|---|---|
| GeneID | 131008282 |
| locus_tag | - |
| NCBI Name | LOC131008282 |
| 原始查询 | SmilChr02G001668 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=31.4; qcov=0.631; evalue=3.89e-31; confidence=low |
| Rice | Os11g0681300- identity=26.6; qcov=0.641; evalue=8.96e-26; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008282 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791153.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057791153.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791153.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791153.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791153.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:30947078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B107,B136,B62,C60 |
Chr2:30947095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,C51,C55 |
Chr2:30947099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B140,B58,B70 |
Chr2:30947129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr2:30947191 |
AC |
A |
1bp_deletion | frameshift_variant | 15 | A20,A23,A3,B107,B108,B33,B45,B47,B68,C29,C48,C7,C72,C80,D1 |
Chr2:30947213 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B123 |
Chr2:30947213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr2:30947265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr2:30947293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B66,C10 |
Chr2:30947300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C41,C65,C7 |
Chr2:30947333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr2:30947349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B66,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。