当前解析结果
SmilChr02G001675| 统一新 Gene ID | SmilChr02G001675 |
|---|---|
| 名称 | SmilChr02G001675 |
| 描述 | uncharacterized SmilChr02G001675 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 30999605 - 31002344 / - |
| NCBI Gene ID | LOC131008288 |
|---|---|
| GeneID | 131008288 |
| locus_tag | - |
| NCBI Name | LOC131008288 |
| 原始查询 | SmilChr02G001675 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=low |
| 产物 | DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G21700 (AT4G21700)DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257] identity=32.9; qcov=1.05; evalue=4.01e-118; confidence=low |
| Rice | Os05g0557500- identity=37.2; qcov=0.523; evalue=6.43e-84; confidence=medium |
| GO | GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF11145 (DUF2921); PF25333 (DUF2921_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008288 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057791158.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057791158.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791158.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791158.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791158.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:30999673 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | A22,B37,B6,C63 |
Chr2:30999673 |
CA |
C |
1bp_deletion | CDS_variant | 4 | A22,B37,B6,C63 |
Chr2:30999812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr2:30999911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr2:30999970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr2:30999989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B120,B80,C20,C30 |
Chr2:31000092 |
AGC |
A |
2bp_deletion | frameshift_variant | 10 | A11,A19,B101,B114,B42,B43,B58,B64,B66,B78 |
Chr2:31000120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr2:31000121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:31000155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,D10 |
Chr2:31000169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,D10 |
Chr2:31000184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791158.1PF25333
DUF2921_N 44-162 aa
PF25333
DUF2921_N 268-348 aa
PF25333
DUF2921_N 383-555 aa
PF11145
DUF2921 571-814 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791158.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 44 | 162 | 4.9e-48 | 165.0 | DUF2921 lipocalin-like domain |
XP_057791158.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 268 | 348 | 4.9e-48 | 165.0 | DUF2921 lipocalin-like domain |
XP_057791158.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 383 | 555 | 4.9e-48 | 165.0 | DUF2921 lipocalin-like domain |
XP_057791158.1 |
Pfam | PF11145 |
DUF2921 | Repeat | 571 | 814 | 2.4e-41 | 142.6 | Transmembrane E3 ligase/DUF2921 transmembrane domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。