当前解析结果
SmilChr02G001676| 统一新 Gene ID | SmilChr02G001676 |
|---|---|
| 名称 | SmilChr02G001676 |
| 描述 | uncharacterized SmilChr02G001676 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 31002665 - 31011168 / + |
| NCBI Gene ID | LOC131013311 |
|---|---|
| GeneID | 131013311 |
| locus_tag | - |
| NCBI Name | LOC131013311 |
| 原始查询 | SmilChr02G001676 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=medium |
| 产物 | DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257]; symbol=AT4G21700; hit=AT4G21700; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G21700 (AT4G21700)DUF2921 family protein, putative (DUF2921) [Source:NCBI gene (formerly Entrezgene);Acc:828257] identity=35; qcov=1.05; evalue=5.21e-161; confidence=medium |
| Rice | Os05g0557500- identity=46.5; qcov=0.42; evalue=1.22e-102; confidence=low |
| GO | GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF11145 (DUF2921); PF25333 (DUF2921_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013311 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797371.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057797371.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797371.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797371.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797371.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:31003184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr2:31003262 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B72 |
Chr2:31003262 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr2:31003271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:31009317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,B83 |
Chr2:31009387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:31009477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:31009543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B28,C15,C17,C79,D11 |
Chr2:31009551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:31010026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:31010096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:31010118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797371.1PF25333
DUF2921_N 34-208 aa
PF25333
DUF2921_N 253-392 aa
PF25333
DUF2921_N 421-623 aa
PF11145
DUF2921 636-901 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797371.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 34 | 208 | 2.3e-51 | 175.8 | DUF2921 lipocalin-like domain |
XP_057797371.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 253 | 392 | 2.3e-51 | 175.8 | DUF2921 lipocalin-like domain |
XP_057797371.1 |
Pfam | PF25333 |
DUF2921_N | Domain | 421 | 623 | 2.3e-51 | 175.8 | DUF2921 lipocalin-like domain |
XP_057797371.1 |
Pfam | PF11145 |
DUF2921 | Repeat | 636 | 901 | 3.9e-62 | 210.6 | Transmembrane E3 ligase/DUF2921 transmembrane domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。