当前解析结果
SmilChr02G001694| 统一新 Gene ID | SmilChr02G001694 |
|---|---|
| 名称 | SmilChr02G001694 |
| 描述 | uncharacterized SmilChr02G001694 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 31232746 - 31233429 / + |
| NCBI Gene ID | LOC131008296 |
|---|---|
| GeneID | 131008296 |
| locus_tag | - |
| NCBI Name | LOC131008296 |
| 原始查询 | SmilChr02G001694 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834302]; symbol=AT5G42905; hit=AT5G42905; species=arabidopsis; confidence=low |
| 产物 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834302]; symbol=AT5G42905; hit=AT5G42905; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G42905 (AT5G42905)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834302] identity=35.2; qcov=0.503; evalue=6.74e-08; confidence=low |
| Rice | -- |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008296 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791166.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057791166.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791166.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791166.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791166.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:31232754 |
T |
TC |
1bp_insertion | frameshift_variant | 13 | A10,B103,B118,B12,B47,B78,B81,C15,C17,C31,C4,C53,C57 |
Chr2:31232774 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:31232809 |
C |
T |
EMS_canonical_SNV | stop_gained | 147 | A1,A10,A13,A15,A18,A19,A23,A24,A4,A7,A8,A9,B10,B100,B102,B109,B11,B110,B111,B114,B119,B120,B121,B122,B123,B124,B125,B128,B129,B131,B133,B134,B136,B138,B139,B140,B15,B17,B18,B22,B23,B24,B25,B26,B27,B29,B3,B34,B35,B36,B38,B39,B4,B40,B44,B48,B51,B52,B55,B56,B57,B6,B62,B64,B67,B68,B69,B70,B71,B72,B74,B75,B76,B77,B8,B84,B85,B87,B88,B89,B90,B91,B92,B93,B95,B96,B97,B99,C1,C11,C13,C14,C16,C19,C2,C20,C21,C22,C24,C25,C26,C27,C31,C32,C36,C38,C42,C44,C45,C46,C47,C5,C50,C51,C52,C54,C55,C57,C58,C59,C62,C64,C66,C67,C68,C69,C7,C70,C71,C73,C77,C78,C79,C80,C82,C83,C84,C87,C9,D1,D2,D3,D4,D5,D7,D8,D9 |
Chr2:31232821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B137,B66 |
Chr2:31232834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr2:31232855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:31232860 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B75 |
Chr2:31232860 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B75 |
Chr2:31232869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:31232908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C55 |
Chr2:31232947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C55 |
Chr2:31232958 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A20,B137,B33,B59,B79,C36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791166.1PF13456
RVT_3 75-132 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791166.1 |
Pfam | PF13456 |
RVT_3 | Domain | 75 | 132 | 5.3e-05 | 23.9 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。