当前解析结果
SmilChr02G001716| 统一新 Gene ID | SmilChr02G001716 |
|---|---|
| 名称 | SmilChr02G001716 |
| 描述 | probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 31598685 - 31604736 / - |
| NCBI Gene ID | LOC131013345 |
|---|---|
| GeneID | 131013345 |
| locus_tag | - |
| NCBI Name | LOC131013345 |
| 原始查询 | SmilChr02G001716 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 |
| 产物 | probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 |
| Arabidopsis | AT5G53850 (AT5G53850)haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835466] identity=72.4; qcov=1; evalue=0; confidence=high |
| Rice | Os11g0484000 (OsDEP)- identity=72.2; qcov=0.973; evalue=0; confidence=high |
| GO | GO:0000287 (magnesium ion binding); GO:0005737 (cytoplasm); GO:0019509 (GO:0019509); GO:0043874 (acireductone synthase activity); GO:0046570 (methylthioribulose 1-phosphate dehydratase activity) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00596 (Aldolase_II); PF00702 (Hydrolase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013345 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057797398.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057797398.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797398.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797398.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797398.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:31598928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:31598935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B137,B66,B76 |
Chr2:31598945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C71 |
Chr2:31599111 |
T |
TC |
1bp_insertion | frameshift_variant | 42 | A16,A18,A21,B103,B109,B11,B123,B125,B136,B138,B16,B2,B33,B34,B36,B46,B47,B5,B51,B52,B54,B59,B86,B90,B92,C10,C14,C21,C23,C3,C37,C39,C41,C53,C60,C64,C65,C66,C73,C75,C85,D2 |
Chr2:31599141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B83,B94,C24,C49 |
Chr2:31599159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,C36,C47 |
Chr2:31599162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:31599179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B40 |
Chr2:31599408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,C14 |
Chr2:31602159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:31602190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,C79 |
Chr2:31602327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B19,B28,C15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797398.1PF00596
Aldolase_II 33-233 aa
PF00702
Hydrolase 284-495 aa
XP_057797399.1PF00596
Aldolase_II 33-233 aa
PF00702
Hydrolase 284-495 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797398.1 |
Pfam | PF00596 |
Aldolase_II | Domain | 33 | 233 | 6.2e-37 | 128.0 | Class II Aldolase and Adducin N-terminal domain |
XP_057797398.1 |
Pfam | PF00702 |
Hydrolase | Domain | 284 | 495 | 4.6e-11 | 44.2 | haloacid dehalogenase-like hydrolase |
XP_057797399.1 |
Pfam | PF00596 |
Aldolase_II | Domain | 33 | 233 | 5.8e-37 | 128.1 | Class II Aldolase and Adducin N-terminal domain |
XP_057797399.1 |
Pfam | PF00702 |
Hydrolase | Domain | 284 | 495 | 4.4e-11 | 44.2 | haloacid dehalogenase-like hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。