当前解析结果
SmilChr02G001753| 统一新 Gene ID | SmilChr02G001753 |
|---|---|
| 名称 | SmilChr02G001753 |
| 描述 | uncharacterized SmilChr02G001753 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 32242239 - 32243324 / - |
| NCBI Gene ID | LOC131008312 |
|---|---|
| GeneID | 131008312 |
| locus_tag | - |
| NCBI Name | LOC131008312 |
| 原始查询 | SmilChr02G001753 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0177800; species=rice; confidence=weak |
| 产物 | hit=Os08g0177800; species=rice; confidence=weak |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=23.2; qcov=0.429; evalue=7.12e-06; confidence=weak |
| Rice | Os08g0177800- identity=31.4; qcov=0.238; evalue=2.74e-06; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF13456 (RVT_3); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008312 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791182.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057791182.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791182.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791182.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791182.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:32242254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr2:32242255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B103,B83,C29,C77 |
Chr2:32242316 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B82 |
Chr2:32242316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr2:32242323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B103,C77 |
Chr2:32242347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B107,B31 |
Chr2:32242377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B109,B65,C57,C67 |
Chr2:32242379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B30 |
Chr2:32242382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,C21,C49 |
Chr2:32242397 |
G |
A |
EMS_canonical_SNV | stop_gained | 62 | A1,A14,A23,A24,A4,A5,B106,B11,B113,B124,B125,B127,B131,B132,B137,B15,B18,B23,B35,B39,B41,B44,B46,B49,B53,B55,B57,B66,B7,B70,B75,B76,B82,B86,B93,B94,B98,C11,C17,C20,C23,C25,C30,C31,C33,C34,C40,C43,C46,C54,C56,C6,C63,C65,C72,C76,C79,C83,C86,C87,D2,D3 |
Chr2:32242417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:32242419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791182.1PF00075
RNase_H 79-190 aa
PF13456
RVT_3 82-199 aa
PF17921
Integrase_H2C2 291-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791182.1 |
Pfam | PF00075 |
RNase_H | Domain | 79 | 190 | 4.9e-07 | 30.7 | RNase H |
XP_057791182.1 |
Pfam | PF13456 |
RVT_3 | Domain | 82 | 199 | 2.4e-14 | 54.0 | Reverse transcriptase-like |
XP_057791182.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 291 | 339 | 1.4e-10 | 41.8 | Integrase zinc binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。