Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001754

染色体: Chr02 坐标: 32292023-32295229 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001754
名称SmilChr02G001754
描述probable aminotransferase TAT2
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向32292023 - 32295229 / +

ID 对照

NCBI Gene IDLOC131012426
GeneID131012426
locus_tag-
NCBI NameLOC131012426
原始查询SmilChr02G001754

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable aminotransferase TAT2
产物probable aminotransferase TAT2
ArabidopsisAT5G53970 (TAT7)
Tyrosine transaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835480]
identity=69.7; qcov=0.971; evalue=0; confidence=high
RiceOs02g0302700 (OsNAAT2)
-
identity=58.2; qcov=0.961; evalue=5.84e-179; confidence=high
GOGO:0006520 (amino acid metabolic process); GO:0008483 (transaminase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding)
KEGGsmil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00155 (Aminotran_1_2)
InterPro-
eggNOG-
NRGeneID:131012426

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057796362.1
2 Cytoplasm 细胞质 0.60000 XP_057796362.1
3 Peroxisome 过氧化物酶体 0.40000 XP_057796362.1
4 Nucleus 细胞核 0.00000 XP_057796362.1
5 Chromosome 染色体 0.00000 XP_057796362.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057796362.1
411 aa
N
1
206
411
Aminotran_1_2
C
PF00155 Aminotran_1_2 37-402 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796362.1 Pfam PF00155 Aminotran_1_2 Domain 37 402 1.9e-58 199.1 Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940379.1
GAGTAATATATATATATACACCAAACATTTTAGTTTTTATATGACCTAAAACACGGCACTTCAATAAGACAACCATGCATATTGGATTTTCTAGGCTTTTAAATTTCATTTTAGCGGTGCGCGTATATCTATATATTTGAAAACGAGCGTGTAACAATACTATGTTTGTCAAATACTAGCAATGAGATTAAAGAGATAAAAAGTAGCAAAAGGGAATCAGAAATATAACTAATTCCGTGTGAATGCTCTATGTTTTGACT...

CDS

1 records

下载 CDS FASTA
LOC131012426
ATGGAGTTGCAGAATCCAGCGCAGGAGATCGACGCGCCGACTACCATCACCATTAAGGGGATTTTGGGGTTGTTGATGTCGAGTACGGATCCGAAGGAGAGCGGGAAGAGAGTAATTTCGCTGGGGATTGGGGATCCGACTGCGTATTCGTGCTTCCACGCTAGTAATGCTGCTCAGGAAGGTGTTGTGGAGGCTCTGCGCTCCACCAAATTCAACGGCTACGCTCCAACTGCTGGTCTTCCACAAACCAGAGAGGCAAT...

Protein

1 records

下载 Protein FASTA
XP_057796362.1
MELQNPAQEIDAPTTITIKGILGLLMSSTDPKESGKRVISLGIGDPTAYSCFHASNAAQEGVVEALRSTKFNGYAPTAGLPQTREAIAEYLSRDLPYKLPADSVYVTAGCTQAIEIALSVLARPGANILLPRPCFPIYGLCASFRNIEVRYFDLHPEQGWEVDLDAVADLADHNTVAMVIINPGNPCGNVYSYQHLKKIAETAKRLGIVVIADEVYGHLAFGANPFVPMGIFGSIAPVVTLGSLSKRWLVPGWRLGWLVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器