当前解析结果
SmilChr02G001771| 统一新 Gene ID | SmilChr02G001771 |
|---|---|
| 名称 | SmilChr02G001771 |
| 描述 | uncharacterized SmilChr02G001771 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 32472307 - 32477304 / - |
| NCBI Gene ID | LOC131011145 |
|---|---|
| GeneID | 131011145 |
| locus_tag | - |
| NCBI Name | LOC131011145 |
| 原始查询 | SmilChr02G001771 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820739]; symbol=AT3G15090; hit=AT3G15090; species=arabidopsis; confidence=high |
| 产物 | GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820739]; symbol=AT3G15090; hit=AT3G15090; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G15090 (AT3G15090)GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820739] identity=72.1; qcov=0.927; evalue=5.24e-176; confidence=high |
| Rice | Os01g0753100- identity=72.7; qcov=0.916; evalue=2.93e-174; confidence=high |
| GO | GO:0016491 (oxidoreductase activity) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF08240 (ADH_N); PF13602 (ADH_zinc_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011145 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057794921.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057794921.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.20000 | XP_057794921.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057794921.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794921.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:32473651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:32473730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,B105 |
Chr2:32475870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B103,C1 |
Chr2:32475970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B24,B52,C59,D11 |
Chr2:32475986 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:32476890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794921.1PF08240
ADH_N 59-149 aa
PF00107
ADH_zinc_N 190-273 aa
PF13602
ADH_zinc_N_2 222-365 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794921.1 |
Pfam | PF08240 |
ADH_N | Domain | 59 | 149 | 1e-14 | 55.3 | Alcohol dehydrogenase GroES-like domain |
XP_057794921.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 190 | 273 | 2.5e-10 | 41.1 | Zinc-binding dehydrogenase |
XP_057794921.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 222 | 365 | 9.8e-18 | 66.1 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。