Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001777`

染色体: Chr02 坐标: 32538679-32544616 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001777`
名称	SmilChr02G001777
描述	probable E3 ubiquitin-protein ligase ZFP1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	32538679 - 32544616 / `-`

ID 对照

NCBI Gene ID	`LOC131012026`
GeneID	`131012026`
locus_tag	`-`
NCBI Name	`LOC131012026`
原始查询	`SmilChr02G001777`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase ZFP1
产物	probable E3 ubiquitin-protein ligase ZFP1
Arabidopsis	`AT1G53190` (AT1G53190) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841753] identity=34; qcov=1.01; evalue=1.48e-67; confidence=low
Rice	`Os01g0667700` (OsRFP) - identity=31; qcov=1.1; evalue=6.49e-46; confidence=low
GO	GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131012026

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795914.1`
2	Nucleoplasm	核质	0.20000	`XP_057795914.1`
3	Cytoplasm	细胞质	0.20000	`XP_057795914.1`
4	Cytosol	细胞质基质	0.20000	`XP_057795914.1`
5	Chromosome	染色体	0.00000	`XP_057795914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:32538943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B93,C71,C72
`Chr2:32538969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B129,B15,C35,C39,C76
`Chr2:32538984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B46,B63,B73,B83
`Chr2:32538996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr2:32540427`	`T`	`TGG`	2bp_insertion	frameshift_variant	1	B68
`Chr2:32540427`	`T`	`TGG`	2bp_insertion	CDS_variant	1	B68
`Chr2:32540428`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	B68
`Chr2:32540428`	`CTT`	`C`	2bp_deletion	CDS_variant	1	B68
`Chr2:32540533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr2:32540554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:32540589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:32540610`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795914.1

543 aa

272

543

zf-rbx1

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 490-532 aa PF00097 zf-C3HC4 491-531 aa PF13923 zf-C3HC4_2 491-531 aa PF13639 zf-RING_2 491-532 aa

XP_057795915.1

543 aa

272

543

zf-rbx1

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 490-532 aa PF00097 zf-C3HC4 491-531 aa PF13923 zf-C3HC4_2 491-531 aa PF13639 zf-RING_2 491-532 aa

XP_057795916.1

543 aa

272

543

zf-rbx1

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 490-532 aa PF00097 zf-C3HC4 491-531 aa PF13923 zf-C3HC4_2 491-531 aa PF13639 zf-RING_2 491-532 aa

XP_057795917.1

543 aa

272

543

zf-rbx1

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 490-532 aa PF00097 zf-C3HC4 491-531 aa PF13923 zf-C3HC4_2 491-531 aa PF13639 zf-RING_2 491-532 aa

XP_057795918.1

513 aa

256

513

zf-rbx1

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 460-502 aa PF00097 zf-C3HC4 461-501 aa PF13923 zf-C3HC4_2 461-501 aa PF13639 zf-RING_2 461-502 aa

XP_057795919.1

513 aa

256

513

zf-rbx1

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 460-502 aa PF00097 zf-C3HC4 461-501 aa PF13923 zf-C3HC4_2 461-501 aa PF13639 zf-RING_2 461-502 aa

XP_057795920.1

513 aa

256

513

zf-rbx1

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 460-502 aa PF00097 zf-C3HC4 461-501 aa PF13923 zf-C3HC4_2 461-501 aa PF13639 zf-RING_2 461-502 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795914.1`	Pfam	`PF12678`	zf-rbx1	Domain	490	532	1.7e-09	38.5	RING-H2 zinc finger domain
`XP_057795914.1`	Pfam	`PF00097`	zf-C3HC4	Domain	491	531	5.8e-07	30.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795914.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	491	531	5.3e-08	33.3	Zinc finger, C3HC4 type (RING finger)
`XP_057795914.1`	Pfam	`PF13639`	zf-RING_2	Domain	491	532	3.5e-13	50.3	Ring finger domain
`XP_057795915.1`	Pfam	`PF12678`	zf-rbx1	Domain	490	532	1.7e-09	38.5	RING-H2 zinc finger domain
`XP_057795915.1`	Pfam	`PF00097`	zf-C3HC4	Domain	491	531	5.8e-07	30.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795915.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	491	531	5.3e-08	33.3	Zinc finger, C3HC4 type (RING finger)
`XP_057795915.1`	Pfam	`PF13639`	zf-RING_2	Domain	491	532	3.5e-13	50.3	Ring finger domain
`XP_057795916.1`	Pfam	`PF12678`	zf-rbx1	Domain	490	532	1.7e-09	38.5	RING-H2 zinc finger domain
`XP_057795916.1`	Pfam	`PF00097`	zf-C3HC4	Domain	491	531	5.8e-07	30.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795916.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	491	531	5.3e-08	33.3	Zinc finger, C3HC4 type (RING finger)
`XP_057795916.1`	Pfam	`PF13639`	zf-RING_2	Domain	491	532	3.5e-13	50.3	Ring finger domain
`XP_057795917.1`	Pfam	`PF12678`	zf-rbx1	Domain	490	532	1.7e-09	38.5	RING-H2 zinc finger domain
`XP_057795917.1`	Pfam	`PF00097`	zf-C3HC4	Domain	491	531	5.8e-07	30.0	Zinc finger, C3HC4 type (RING finger)
`XP_057795917.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	491	531	5.3e-08	33.3	Zinc finger, C3HC4 type (RING finger)
`XP_057795917.1`	Pfam	`PF13639`	zf-RING_2	Domain	491	532	3.5e-13	50.3	Ring finger domain
`XP_057795918.1`	Pfam	`PF12678`	zf-rbx1	Domain	460	502	1.6e-09	38.6	RING-H2 zinc finger domain
`XP_057795918.1`	Pfam	`PF00097`	zf-C3HC4	Domain	461	501	5.3e-07	30.1	Zinc finger, C3HC4 type (RING finger)
`XP_057795918.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	461	501	4.9e-08	33.4	Zinc finger, C3HC4 type (RING finger)
`XP_057795918.1`	Pfam	`PF13639`	zf-RING_2	Domain	461	502	3.2e-13	50.4	Ring finger domain
`XP_057795919.1`	Pfam	`PF12678`	zf-rbx1	Domain	460	502	1.6e-09	38.6	RING-H2 zinc finger domain
`XP_057795919.1`	Pfam	`PF00097`	zf-C3HC4	Domain	461	501	5.3e-07	30.1	Zinc finger, C3HC4 type (RING finger)
`XP_057795919.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	461	501	4.9e-08	33.4	Zinc finger, C3HC4 type (RING finger)
`XP_057795919.1`	Pfam	`PF13639`	zf-RING_2	Domain	461	502	3.2e-13	50.4	Ring finger domain
`XP_057795920.1`	Pfam	`PF12678`	zf-rbx1	Domain	460	502	1.6e-09	38.6	RING-H2 zinc finger domain
`XP_057795920.1`	Pfam	`PF00097`	zf-C3HC4	Domain	461	501	5.3e-07	30.1	Zinc finger, C3HC4 type (RING finger)
`XP_057795920.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	461	501	4.9e-08	33.4	Zinc finger, C3HC4 type (RING finger)
`XP_057795920.1`	Pfam	`PF13639`	zf-RING_2	Domain	461	502	3.2e-13	50.4	Ring finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057939932.1
GAAGAAAAATTACATTACTACAAGAATTGGGAGAGAACATTAATAGGTGATTTCCCCATAAAAATTCTCTTTCTCTCTCTAAAAAATTTGCAAGGGAATTCTTCCCTGTTCATCTTCATTCAGATCTCTCGACCTTTGTATTTTCACCATCCTTTAATTTGGAGTTACAAGTAATTCCGCGGAATTTGTTGCTGGTGATTATCAAAGGTGGAAGCTTGCGAAAGCTTGAAACATTTTCATGTTAAATAGGCAGCTCATCC...

XM_057939933.1
GAAGAAAAATTACATTACTACAAGAATTGGGAGAGAACATTAATAGGTGATTTCCCCATAAAAATTCTCTTTCTCTCTCTAAAAAATTTGCAAGGGAATTCTTCCCTGTTCATCTTCATTCAGATCTCTCGACCTTTGTATTTTCACCATCCTTTAATTTGGAGTTACAAGTAATTCCGCGGAATTTGTTGCTGGTGATTATCAAAGGTGGAAGCTTGCGAAAGCTTGAAACATTTTCATGTTAAATAGGTGCTGTCGGA...

CDS

7 records

下载 CDS FASTA

LOC131012026
ATGGGACACCGAAATATTCAGTTCACTGGTCATATGACTGATATGGAAACTGATCAACAAGGCCACGGCCATCTACATCCTGAACCTTGCATCTTTTATGGGAGTATAGCGAACTTTCCTCATCCTAGTTTTCACTCAATGGTCCCCGCACCAGGAAGCCAGGTAAATTTCAACTTCCACCATATGCCAGAACGTCACGACAGTACCTTGTTCTATGGAATGCCGCAGTTAAATGGCCCCCAGCATCAACATCCAGCCCC...

Protein

7 records

下载 Protein FASTA

XP_057795914.1
MGHRNIQFTGHMTDMETDQQGHGHLHPEPCIFYGSIANFPHPSFHSMVPAPGSQVNFNFHHMPERHDSTLFYGMPQLNGPQHQHPAPNLDLAIAAPSGHYNPYMAPPSGIRDFPVQVNHGTHDQLSLSSTHRVVGIPTDTYSRSIPYMDSIRASFKRKNAEGASGSYQYHNASAGPSSSVAPGTPMGAESDITLMDPTSFLQPDYGSNDPALVVEGGSQRSARNRLRMVGHESVVTHNAGHLIQGNFAAPPVQLPGNPWL...

XP_057795915.1
MGHRNIQFTGHMTDMETDQQGHGHLHPEPCIFYGSIANFPHPSFHSMVPAPGSQVNFNFHHMPERHDSTLFYGMPQLNGPQHQHPAPNLDLAIAAPSGHYNPYMAPPSGIRDFPVQVNHGTHDQLSLSSTHRVVGIPTDTYSRSIPYMDSIRASFKRKNAEGASGSYQYHNASAGPSSSVAPGTPMGAESDITLMDPTSFLQPDYGSNDPALVVEGGSQRSARNRLRMVGHESVVTHNAGHLIQGNFAAPPVQLPGNPWL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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