当前解析结果
SmilChr02G001782| 统一新 Gene ID | SmilChr02G001782 |
|---|---|
| 名称 | SmilChr02G001782 |
| 描述 | uncharacterized SmilChr02G001782 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 32606308 - 32607757 / - |
| NCBI Gene ID | LOC131012031 |
|---|---|
| GeneID | 131012031 |
| locus_tag | - |
| NCBI Name | LOC131012031 |
| 原始查询 | SmilChr02G001782 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:836069]; symbol=AT5G59500; hit=AT5G59500; species=arabidopsis; confidence=high |
| 产物 | protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:836069]; symbol=AT5G59500; hit=AT5G59500; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G59500 (AT5G59500)protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:836069] identity=54.1; qcov=1; evalue=9.8e-142; confidence=high |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF04191 (PEMT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012031 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057795923.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057795923.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795923.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795923.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795923.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:32606499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:32606533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr2:32606549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B98 |
Chr2:32606565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,D11 |
Chr2:32606567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:32606604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B1,C30 |
Chr2:32606658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:32606742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:32606760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:32606762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:32606773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr2:32607084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795923.1PF04191
PEMT 317-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795923.1 |
Pfam | PF04191 |
PEMT | Family | 317 | 382 | 3e-07 | 31.5 | Phospholipid methyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。