当前解析结果
SmilChr02G001813| 统一新 Gene ID | SmilChr02G001813 |
|---|---|
| 名称 | SmilChr02G001813 |
| 描述 | increased DNA methylation 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 32970975 - 32982329 / + |
| NCBI Gene ID | LOC131012064 |
|---|---|
| GeneID | 131012064 |
| locus_tag | - |
| NCBI Name | LOC131012064 |
| 原始查询 | SmilChr02G001813 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | increased DNA methylation 1 |
| 产物 | increased DNA methylation 1 |
| Arabidopsis | AT3G14980 (ROS4)Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:820727] identity=41.7; qcov=0.886; evalue=0; confidence=medium |
| Rice | Os04g0433900- identity=47.5; qcov=0.397; evalue=8.86e-141; confidence=low |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | - |
| Pfam | PF00583 (Acetyltransf_1); PF00628 (PHD); PF16135 (TDBD); PF23209 (IDM1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012064 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795955.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057795955.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057795955.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057795955.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057795955.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:32973663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C30 |
Chr2:32973669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B122,C4,D11,D3 |
Chr2:32974459 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | D3 |
Chr2:32974459 |
TG |
T |
1bp_deletion | CDS_variant | 1 | D3 |
Chr2:32974743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B49,B60,B79,C33 |
Chr2:32974907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B122,C4,D11,D3 |
Chr2:32975296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:32975462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B29,B97,C52 |
Chr2:32975532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:32975690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:32979478 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B69,C13,C30,C84 |
Chr2:32982024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795955.1PF16135
TDBD 636-686 aa
PF00628
PHD 714-753 aa
PF23209
IDM1_C 871-1009 aa
PF00583
Acetyltransf_1 901-966 aa
XP_057795956.1PF16135
TDBD 636-686 aa
PF00628
PHD 714-753 aa
PF23209
IDM1_C 871-1009 aa
PF00583
Acetyltransf_1 901-966 aa
XP_057795957.1PF16135
TDBD 636-686 aa
PF00628
PHD 714-753 aa
PF23209
IDM1_C 871-1009 aa
PF00583
Acetyltransf_1 901-966 aa
XP_057795958.1PF16135
TDBD 636-686 aa
PF00628
PHD 714-753 aa
PF23209
IDM1_C 871-1009 aa
PF00583
Acetyltransf_1 901-966 aa
XP_057795959.1PF16135
TDBD 636-686 aa
PF00628
PHD 714-753 aa
PF23209
IDM1_C 871-1009 aa
PF00583
Acetyltransf_1 901-966 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795955.1 |
Pfam | PF16135 |
TDBD | Domain | 636 | 686 | 1.3e-18 | 67.5 | Tify domain binding domain |
XP_057795955.1 |
Pfam | PF00628 |
PHD | Domain | 714 | 753 | 1.4e-06 | 28.9 | PHD-finger |
XP_057795955.1 |
Pfam | PF23209 |
IDM1_C | Domain | 871 | 1009 | 2.2e-58 | 197.0 | Increased DNA methylation 1, C-terminal domain |
XP_057795955.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 901 | 966 | 0.00017 | 22.6 | Acetyltransferase (GNAT) family |
XP_057795956.1 |
Pfam | PF16135 |
TDBD | Domain | 636 | 686 | 1.3e-18 | 67.5 | Tify domain binding domain |
XP_057795956.1 |
Pfam | PF00628 |
PHD | Domain | 714 | 753 | 1.4e-06 | 28.9 | PHD-finger |
XP_057795956.1 |
Pfam | PF23209 |
IDM1_C | Domain | 871 | 1009 | 2.2e-58 | 197.0 | Increased DNA methylation 1, C-terminal domain |
XP_057795956.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 901 | 966 | 0.00017 | 22.6 | Acetyltransferase (GNAT) family |
XP_057795957.1 |
Pfam | PF16135 |
TDBD | Domain | 636 | 686 | 1.3e-18 | 67.5 | Tify domain binding domain |
XP_057795957.1 |
Pfam | PF00628 |
PHD | Domain | 714 | 753 | 1.4e-06 | 28.9 | PHD-finger |
XP_057795957.1 |
Pfam | PF23209 |
IDM1_C | Domain | 871 | 1009 | 2.2e-58 | 197.0 | Increased DNA methylation 1, C-terminal domain |
XP_057795957.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 901 | 966 | 0.00017 | 22.6 | Acetyltransferase (GNAT) family |
XP_057795958.1 |
Pfam | PF16135 |
TDBD | Domain | 636 | 686 | 1.3e-18 | 67.5 | Tify domain binding domain |
XP_057795958.1 |
Pfam | PF00628 |
PHD | Domain | 714 | 753 | 1.4e-06 | 28.9 | PHD-finger |
XP_057795958.1 |
Pfam | PF23209 |
IDM1_C | Domain | 871 | 1009 | 2.2e-58 | 197.0 | Increased DNA methylation 1, C-terminal domain |
XP_057795958.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 901 | 966 | 0.00017 | 22.6 | Acetyltransferase (GNAT) family |
XP_057795959.1 |
Pfam | PF16135 |
TDBD | Domain | 636 | 686 | 1.3e-18 | 67.5 | Tify domain binding domain |
XP_057795959.1 |
Pfam | PF00628 |
PHD | Domain | 714 | 753 | 1.4e-06 | 28.9 | PHD-finger |
XP_057795959.1 |
Pfam | PF23209 |
IDM1_C | Domain | 871 | 1009 | 2.2e-58 | 197.0 | Increased DNA methylation 1, C-terminal domain |
XP_057795959.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 901 | 966 | 0.00017 | 22.6 | Acetyltransferase (GNAT) family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。