当前解析结果
SmilChr02G001843| 统一新 Gene ID | SmilChr02G001843 |
|---|---|
| 名称 | SmilChr02G001843 |
| 描述 | transcription factor TCP4-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 33641703 - 33644023 / - |
| NCBI Gene ID | LOC131008329 |
|---|---|
| GeneID | 131008329 |
| locus_tag | - |
| NCBI Name | LOC131008329 |
| 原始查询 | SmilChr02G001843 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor TCP4-like |
| 产物 | transcription factor TCP4-like |
| Arabidopsis | AT3G15030 (TCP4)TCP family transcription factor 4 [Source:NCBI gene (formerly Entrezgene);Acc:820732] identity=40.8; qcov=1.1; evalue=1.83e-24; confidence=medium |
| Rice | Os01g0213800 (OsPCF5)- identity=35.8; qcov=1.06; evalue=4.6e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008329 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791196.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791196.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791196.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791196.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791196.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:33641744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B117,C24,C27,C83 |
Chr2:33641758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B125,C41,D1,D6 |
Chr2:33641774 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B59,B6,C67 |
Chr2:33641782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:33641784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr2:33641793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B125,C41 |
Chr2:33641795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B34,B8,C62,C71 |
Chr2:33641805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr2:33641813 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B37,B57,C59,C71,C8 |
Chr2:33641813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B37,B57,C59,C71,C8 |
Chr2:33641817 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B125,C41 |
Chr2:33641817 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B125,C41 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。