Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001844`

染色体: Chr02 坐标: 33657329-33661003 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001844`
名称	SmilChr02G001844
描述	glycolate oxidase 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	33657329 - 33661003 / `-`

ID 对照

NCBI Gene ID	`LOC131012093`
GeneID	`131012093`
locus_tag	`-`
NCBI Name	`LOC131012093`
原始查询	`SmilChr02G001844`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycolate oxidase 1
产物	glycolate oxidase 1
Arabidopsis	`AT3G14415` (GOX2) Aldolase-type TIM barrel family protein [Source:NCBI gene (formerly Entrezgene);Acc:820664] identity=90.4; qcov=0.984; evalue=0; confidence=high
Rice	`Os07g0152900` (GLO5) - identity=87.5; qcov=0.992; evalue=0; confidence=high
GO	GO:0005777 (peroxisome); GO:0010181 (FMN binding); GO:0016491 (oxidoreductase activity)
KEGG	smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01070 (FMN_dh)
InterPro	-
eggNOG	-
NR	GeneID:131012093

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057795989.1`
2	Cytosol	细胞质基质	0.20000	`XP_057795989.1`
3	Nucleus	细胞核	0.00000	`XP_057795989.1`
4	Chromosome	染色体	0.00000	`XP_057795989.1`
5	Centromere	着丝粒	0.00000	`XP_057795989.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:33657480`	`TA`	`T`	1bp_deletion	frameshift_variant	1	A25
`Chr2:33657480`	`TA`	`T`	1bp_deletion	CDS_variant	1	A25
`Chr2:33657537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:33657606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B107,B94,D3
`Chr2:33657640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:33657773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr2:33658049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr2:33658236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C27,C83
`Chr2:33659933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B82,B95,D6
`Chr2:33659948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:33659961`	`AAT`	`A`	2bp_deletion	frameshift_variant	1	B22
`Chr2:33659961`	`AAT`	`A`	2bp_deletion	CDS_variant	1	B22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795989.1

370 aa

185

370

FMN_dh

PF01070 FMN_dh 14-356 aa

XP_057795990.1

370 aa

185

370

FMN_dh

PF01070 FMN_dh 14-356 aa

XP_057795991.1

370 aa

185

370

FMN_dh

PF01070 FMN_dh 14-356 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795989.1`	Pfam	`PF01070`	FMN_dh	Domain	14	356	8.8e-138	459.8	FMN-dependent dehydrogenase
`XP_057795990.1`	Pfam	`PF01070`	FMN_dh	Domain	14	356	8.8e-138	459.8	FMN-dependent dehydrogenase
`XP_057795991.1`	Pfam	`PF01070`	FMN_dh	Domain	14	356	8.8e-138	459.8	FMN-dependent dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940007.1
ATGCAAACTGAATTTTTTTGCCCATAGAGTTTGGTGGATAATGAAGAAAAGACTGTGAAACACACAAGAAGGGTGTGGCAGAGAGCAGCCCATTTGCCCACTGATCGGATGCGGTTTTAAATTCTAACCTCCAAAAGCTAATCCTCAATTTTGTGCCACTCCATTCATGACCACCACATCCTTTGTCGTCTTCCTCTGTTTTCCCCAAATCTTCTTGTTTTTTAGCAATTATTTGTCAATATTTTTCTTGGCTCACTGCC...

XM_057940008.1
TTTTTGCCCATAGAGTTTGGTGGATAATGAAGAAAAGACTGTGAAACACACAAGAAGGGTGTGGCAGAGAGCAGCCCATTTGCCCACTGATCGGATGCGGTTTTAAATTCTAACCTCCAAAAGCTAATCCTCAATTTTGTGCCACTCCATTCATGACCACCACATCCTTTGTCGTCTTCCTCTGTTTTCCCCAAATCTTCTTGTTTTTTAGCAATTATTTGTCAATATTTTTCTTGGCTCACTGCCATTCGAGTTTATCT...

CDS

3 records

下载 CDS FASTA

LOC131012093
ATGGGTGAGATCACAAACGTAAGCGAGTACCAGGCTATTGCCAAGGAGAAATTGCCGAAAATGGCGTATGACTATTATGCTTCGGGCGCAGAGGACCAATGGACTCTTGCTGAGAACAGAAATGCATTTTCGAGGATTCTGTTTAGGCCCCGGATTCTGATTGATGTAAGCAAGATCGACATGACTACCACTGTGTTGGGCTTCAAGATCTCTATGCCAATCATGATTGCCCCCACTGCTTTTCAGAAAATGGCTCACCC...

Protein

3 records

下载 Protein FASTA

XP_057795989.1
MGEITNVSEYQAIAKEKLPKMAYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFVLPPGLTLKNFEGLNLGKMDQANDSGLASYVAGQIDRTLSWKDVKWLQSITSMPILVKGVLTAEDARIAVQSGAAGIIVSNHGARQL...

XP_057795990.1
MGEITNVSEYQAIAKEKLPKMAYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFVLPPGLTLKNFEGLNLGKMDQANDSGLASYVAGQIDRTLSWKDVKWLQSITSMPILVKGVLTAEDARIAVQSGAAGIIVSNHGARQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器