当前解析结果
SmilChr02G001851| 统一新 Gene ID | SmilChr02G001851 |
|---|---|
| 名称 | SmilChr02G001851 |
| 描述 | glutathione S-transferase T3-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 33737930 - 33738989 / + |
| NCBI Gene ID | LOC131008333 |
|---|---|
| GeneID | 131008333 |
| locus_tag | - |
| NCBI Name | LOC131008333 |
| 原始查询 | SmilChr02G001851 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione S-transferase T3-like |
| 产物 | glutathione S-transferase T3-like |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=33; qcov=0.809; evalue=1.01e-22; confidence=low |
| Rice | Os01g0527900- identity=28.1; qcov=0.624; evalue=9.19e-15; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008333 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791198.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791198.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791198.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791198.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:33738213 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | B12,B32,B42,B48,B86,B95,C14,C34,C39,C53,C57,C62,C63,D2 |
Chr2:33738226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B24,C48,D1 |
Chr2:33738237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr2:33738262 |
C |
CAA |
2bp_insertion | frameshift_variant | 20 | A13,A18,A21,A25,A8,B124,B132,B39,B46,B68,B79,B8,B87,B91,B99,C48,C68,C75,C84,D9 |
Chr2:33738286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B35,B64 |
Chr2:33738294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:33738340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B61,B80,C40 |
Chr2:33738354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B61,B80,C40 |
Chr2:33738357 |
C |
CA |
1bp_insertion | frameshift_variant | 24 | A23,B108,B117,B12,B121,B128,B133,B136,B18,B23,B33,B69,B75,B81,B83,B86,C14,C15,C23,C24,C38,C6,C71,D11 |
Chr2:33738387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B83,C64,C66 |
Chr2:33738401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B90,C10,C70 |
Chr2:33738405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,C30,C4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。