当前解析结果
SmilChr02G001860| 统一新 Gene ID | SmilChr02G001860 |
|---|---|
| 名称 | SmilChr02G001860 |
| 描述 | uncharacterized protein At2g29880-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 33825683 - 33826738 / - |
| NCBI Gene ID | LOC131008336 |
|---|---|
| GeneID | 131008336 |
| locus_tag | - |
| NCBI Name | LOC131008336 |
| 原始查询 | SmilChr02G001860 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=medium |
| 产物 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G27260 (AT5G27260)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784] identity=35.3; qcov=0.997; evalue=3.94e-52; confidence=medium |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF12776 (Myb_DNA-bind_3); PF24769 (At2g29880_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008336 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791202.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791202.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791202.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791202.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791202.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:33825698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:33825699 |
T |
TA |
1bp_insertion | frameshift_variant | 13 | A19,A4,B118,B23,B45,B7,B72,C1,C25,C31,C67,C68,C73 |
Chr2:33825711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:33825717 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:33825788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B13,B93,C2 |
Chr2:33825810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B115,B126,B70 |
Chr2:33825863 |
CT |
C |
1bp_deletion | frameshift_variant | 5 | B19,B34,C5,C58,D8 |
Chr2:33825863 |
CT |
C |
1bp_deletion | CDS_variant | 5 | B19,B34,C5,C58,D8 |
Chr2:33825880 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | A16,A4,B10,B112,B113,B117,B22,B64,B73,B87,B94,B95,C24,C25,C78,D1,D11,D4 |
Chr2:33825894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr2:33825921 |
AT |
A |
1bp_deletion | frameshift_variant | 78 | A14,A16,A2,A23,A24,A8,B107,B108,B111,B119,B120,B121,B124,B125,B129,B132,B134,B15,B16,B22,B25,B28,B29,B3,B41,B42,B5,B54,B56,B57,B58,B61,B65,B67,B69,B71,B74,B77,B8,B80,B91,B94,B96,B97,C10,C12,C19,C23,C25,C27,C4,C44,C46,C47,C49,C51,C52,C54,C56,C59,C61,C62,C70,C71,C72,C76,C80,C81,C84,C85,C87,D1,D10,D11,D3,D5,D6,D7 |
Chr2:33825994 |
G |
A |
EMS_canonical_SNV | stop_gained | 54 | A1,A14,A20,A21,A22,B109,B113,B117,B2,B20,B23,B25,B32,B33,B40,B46,B50,B53,B67,B79,B82,B84,B85,B88,B90,B98,C13,C17,C19,C24,C27,C29,C35,C37,C39,C43,C46,C49,C5,C58,C59,C6,C60,C61,C62,C64,C66,C7,C72,C76,C8,C83,D10,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791202.1PF12776
Myb_DNA-bind_3 18-114 aa
PF24769
At2g29880_C 276-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791202.1 |
Pfam | PF12776 |
Myb_DNA-bind_3 | Domain | 18 | 114 | 2.2e-17 | 64.5 | Myb/SANT-like DNA-binding domain |
XP_057791202.1 |
Pfam | PF24769 |
At2g29880_C | Domain | 276 | 320 | 2.9e-22 | 79.5 | At2g29880 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。