Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001876`

染色体: Chr02 坐标: 34059139-34064613 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001876`
名称	SmilChr02G001876
描述	translation initiation factor IF-2, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	34059139 - 34064613 / `-`

ID 对照

NCBI Gene ID	`LOC131012116`
GeneID	`131012116`
locus_tag	`-`
NCBI Name	`LOC131012116`
原始查询	`SmilChr02G001876`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	translation initiation factor IF-2, chloroplastic-like
产物	translation initiation factor IF-2%2C chloroplastic-like
Arabidopsis	`AT1G17220` (FUG1) Translation initiation factor 2, small GTP-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:838293] identity=66.5; qcov=1.03; evalue=0; confidence=high
Rice	`Os05g0575300` - identity=75.1; qcov=0.551; evalue=0; confidence=medium
GO	GO:0003743 (translation initiation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0006413 (translational initiation)
KEGG	-
Pfam	PF00009 (GTP_EFTU); PF00071 (Ras); PF01926 (MMR_HSR1); PF11987 (IF-2); PF22042 (EF-G_D2)
InterPro	-
eggNOG	-
NR	GeneID:131012116

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796010.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057796010.1`
3	Chloroplast thylakoid	类囊体	0.60000	`XP_057796010.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057796010.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057796010.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:34059503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,A9,B135
`Chr2:34059951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:34060265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B8
`Chr2:34060446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C33,C49
`Chr2:34062208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:34062759`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B135,D11
`Chr2:34062876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B121,B9,C9
`Chr2:34063041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C5,C58
`Chr2:34063780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:34063811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B117,C27,C83
`Chr2:34063962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C28,C5,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796010.1

1005 aa

502

1005

GTP_EFTU

MMR_HSR1

Ras

EF-G_D2

IF-2

PF00009 GTP_EFTU 483-642 aa PF01926 MMR_HSR1 484-592 aa PF00071 Ras 484-642 aa PF22042 EF-G_D2 658-736 aa PF11987 IF-2 786-880 aa

XP_057796011.1

1005 aa

502

1005

GTP_EFTU

MMR_HSR1

Ras

EF-G_D2

IF-2

PF00009 GTP_EFTU 483-642 aa PF01926 MMR_HSR1 484-592 aa PF00071 Ras 484-642 aa PF22042 EF-G_D2 658-736 aa PF11987 IF-2 786-880 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796010.1`	Pfam	`PF00009`	GTP_EFTU	Domain	483	642	1.5e-35	123.2	Elongation factor Tu GTP binding domain
`XP_057796010.1`	Pfam	`PF01926`	MMR_HSR1	Family	484	592	4.3e-09	37.2	50S ribosome-binding GTPase
`XP_057796010.1`	Pfam	`PF00071`	Ras	Domain	484	642	2.2e-07	31.3	Ras family
`XP_057796010.1`	Pfam	`PF22042`	EF-G_D2	Domain	658	736	5.4e-31	107.3	Elongation factor G domain 2
`XP_057796010.1`	Pfam	`PF11987`	IF-2	Domain	786	880	8.9e-31	107.0	Translation-initiation factor 2
`XP_057796011.1`	Pfam	`PF00009`	GTP_EFTU	Domain	483	642	1.5e-35	123.2	Elongation factor Tu GTP binding domain
`XP_057796011.1`	Pfam	`PF01926`	MMR_HSR1	Family	484	592	4.3e-09	37.2	50S ribosome-binding GTPase
`XP_057796011.1`	Pfam	`PF00071`	Ras	Domain	484	642	2.2e-07	31.3	Ras family
`XP_057796011.1`	Pfam	`PF22042`	EF-G_D2	Domain	658	736	5.4e-31	107.3	Elongation factor G domain 2
`XP_057796011.1`	Pfam	`PF11987`	IF-2	Domain	786	880	8.9e-31	107.0	Translation-initiation factor 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940027.1
GAAATCTATGAATCGAAGCCTTATCATGCAAATGACAGGCATAGGAATAGCCACACAAGCCTAACCCAACCCACACCACAACACATCTTATGTTTCTAACTCCCTCAGCCACTCACTTCTCCTGTTTCAATTGCCGCTTCTTCCTTTCTCTATCTTTCTCCCTCGCTCATCACTTTCAGTTCTTGAGAGAGAAAACGCTCACACTTCAGGAACGGAATCCCGACATTCTGCAGGAGAGTGGCAATATTTGAGTTGAATAT...

XM_057940028.1
CAGGCATAGGAATAGCCACACAAGCCTAACCCAACCCACACCACAACACATCTTATGTTTCTAACTCCCTCAGCCACTCACTTCTCCTGTTTCAATTGCCGCTTCTTCCTTTCTCTATCTTTCTCCCTCGCTCATCACTTTCAGTTCTTGAGAGAGAAAACGCTCACACTTCAGGAACGGAATCCCGACATTCTGCAGGGCATATAAGTATTAAGCATGGCTTCATTAGCTTCCCTTGCGAATTTGGGAAGCTTGAATAT...

CDS

2 records

下载 CDS FASTA

LOC131012116
ATGGCTTCATTAGCTTCCCTTGCGAATTTGGGAAGCTTGAATATGATTTCCTTTGGTAATTTTGACGGGTCTGTTTGTTTAGTTAGGAGCATTTCTATTCATAGAAATGGGAGTAGTTTTAGTGGAAGGAGGTGGAGGTATGTTGGTGTTTGTAGATATTCTGTAACGACAGATTACATTGCGGAACAAGGGACTTCGGTGTCTCTTGATTCGACATATGGTGGTAGCAAAGAGAGTGACACTAATACATTTCTCAAGGC...

Protein

2 records

下载 Protein FASTA

XP_057796010.1
MASLASLANLGSLNMISFGNFDGSVCLVRSISIHRNGSSFSGRRWRYVGVCRYSVTTDYIAEQGTSVSLDSTYGGSKESDTNTFLKAAPKPVLKSGSKPNPLLNMTPDESKVSVRSDAERMSDAEEERSKVIESLGEVLEKAEKLETSKKPDAPVSKPLTSDVVNQKNGKPFSSTESTNRKSNKTNKSVWRKGNPVSAVQKIGKETVRQEPRIDEGGVSLSSSQPVAPPTPPQPPQKTQPKLQERPSVAPPAPAVKKPVI...

XP_057796011.1
MASLASLANLGSLNMISFGNFDGSVCLVRSISIHRNGSSFSGRRWRYVGVCRYSVTTDYIAEQGTSVSLDSTYGGSKESDTNTFLKAAPKPVLKSGSKPNPLLNMTPDESKVSVRSDAERMSDAEEERSKVIESLGEVLEKAEKLETSKKPDAPVSKPLTSDVVNQKNGKPFSSTESTNRKSNKTNKSVWRKGNPVSAVQKIGKETVRQEPRIDEGGVSLSSSQPVAPPTPPQPPQKTQPKLQERPSVAPPAPAVKKPVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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