当前解析结果
SmilChr02G001893| 统一新 Gene ID | SmilChr02G001893 |
|---|---|
| 名称 | SmilChr02G001893 |
| 描述 | uncharacterized SmilChr02G001893 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 34235795 - 34239338 / + |
| NCBI Gene ID | LOC131008348 |
|---|---|
| GeneID | 131008348 |
| locus_tag | - |
| NCBI Name | LOC131008348 |
| 原始查询 | SmilChr02G001893 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:3767434]; symbol=AT1G51172; hit=AT1G51172; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:3767434]; symbol=AT1G51172; hit=AT1G51172; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G51172 (AT1G51172)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:3767434] identity=30.7; qcov=0.353; evalue=1.25e-14; confidence=low |
| Rice | Os02g0307900- identity=32.1; qcov=0.244; evalue=6.15e-09; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008348 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791215.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057791215.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791215.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791215.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791215.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:34235800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B109,B97,C45 |
Chr2:34235821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B132 |
Chr2:34235823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B117,B6,C17,C67 |
Chr2:34235848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,A2 |
Chr2:34235858 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | C12,C4 |
Chr2:34235858 |
G |
GT |
1bp_insertion | CDS_variant | 2 | C12,C4 |
Chr2:34235865 |
G |
A |
EMS_canonical_SNV | stop_gained | 28 | A15,A5,B114,B29,B41,B42,B43,B53,B55,B56,B62,B66,B70,B88,B90,B96,C14,C15,C2,C20,C44,C53,C60,C64,C66,C80,D2,D9 |
Chr2:34235868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,C87,D5 |
Chr2:34235870 |
A |
AG |
1bp_insertion | frameshift_variant | 139 | A1,A10,A11,A13,A15,A16,A2,A21,A22,A4,A5,A6,A8,A9,B101,B104,B109,B11,B111,B117,B119,B12,B122,B125,B126,B127,B128,B131,B132,B133,B136,B138,B139,B14,B140,B16,B17,B18,B19,B2,B20,B26,B28,B29,B3,B31,B34,B35,B37,B4,B41,B42,B45,B46,B48,B50,B52,B54,B58,B59,B60,B61,B65,B66,B67,B70,B72,B74,B76,B79,B8,B82,B83,B86,B9,B90,B91,B92,B94,B95,B98,B99,C1,C10,C11,C12,C13,C15,C16,C2,C21,C23,C24,C27,C29,C3,C31,C32,C39,C40,C41,C43,C45,C46,C47,C5,C52,C54,C55,C56,C57,C58,C59,C6,C64,C65,C66,C68,C72,C73,C74,C75,C78,C79,C8,C82,C83,C85,C86,C87,C9,D1,D10,D4,D5,D6,D7,D8,D9 |
Chr2:34235874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B109,B97,C45,C82 |
Chr2:34235901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr2:34235912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。