当前解析结果
SmilChr02G001896| 统一新 Gene ID | SmilChr02G001896 |
|---|---|
| 名称 | SmilChr02G001896 |
| 描述 | cytochrome P450 CYP72A219-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 34264487 - 34266626 / + |
| NCBI Gene ID | LOC131012131 |
|---|---|
| GeneID | 131012131 |
| locus_tag | - |
| NCBI Name | LOC131012131 |
| 原始查询 | SmilChr02G001896 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 CYP72A219-like |
| 产物 | cytochrome P450 CYP72A219-like |
| Arabidopsis | AT3G14690 (CYP72A15)cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697] identity=49; qcov=1.01; evalue=2.29e-178; confidence=high |
| Rice | Os01g0627500 (OsCYP72A18)- identity=49.4; qcov=0.963; evalue=8.39e-170; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012131 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057796024.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057796024.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796024.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796024.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796024.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:34264687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B14,B8,C32,C53,C68 |
Chr2:34264812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr2:34265013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B74,C40,C7 |
Chr2:34265364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B40,B93,C2,D3 |
Chr2:34265382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr2:34265391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:34265633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,C46,C7 |
Chr2:34265786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B122,B140 |
Chr2:34265834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B64,B80,C61,D10 |
Chr2:34265858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:34265859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,C13,C30,C74 |
Chr2:34265891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B107,B15,B94,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796024.1PF00067
p450 82-488 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796024.1 |
Pfam | PF00067 |
p450 | Domain | 82 | 488 | 4.4e-84 | 283.6 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。