Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001906`

染色体: Chr02 坐标: 34356554-34360351 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001906`
名称	SmilChr02G001906
描述	solanesyl diphosphate synthase 2, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	34356554 - 34360351 / `+`

ID 对照

NCBI Gene ID	`LOC131012140`
GeneID	`131012140`
locus_tag	`-`
NCBI Name	`LOC131012140`
原始查询	`SmilChr02G001906`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	solanesyl diphosphate synthase 2, chloroplastic-like
产物	solanesyl diphosphate synthase 2%2C chloroplastic-like
Arabidopsis	`AT1G17050` (SPS2) solanesyl diphosphate synthase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838275] identity=66.9; qcov=0.998; evalue=0; confidence=high
Rice	`Os12g0271700` (OsSPS3) - identity=71.3; qcov=0.912; evalue=0; confidence=high
GO	GO:0004659 (prenyltransferase activity); GO:0008299 (isoprenoid biosynthetic process); GO:0009507 (chloroplast); GO:0010236 (plastoquinone biosynthetic process)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00348 (polyprenyl_synt)
InterPro	-
eggNOG	-
NR	GeneID:131012140

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796038.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057796038.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057796038.1`
4	Nucleus	细胞核	0.00000	`XP_057796038.1`
5	Chromosome	染色体	0.00000	`XP_057796038.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:34359311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B59
`Chr2:34359461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C81,D5
`Chr2:34359481`	`C`	`CT`	1bp_insertion	frameshift_variant	46	A1,A16,A8,B110,B128,B19,B23,B25,B29,B3,B30,B31,B32,B38,B39,B42,B43,B6,B7,B73,B80,B84,B86,B87,B92,B97,B99,C13,C14,C17,C19,C27,C29,C39,C44,C49,C54,C59,C6,C66,C68,C76,C78,D3,D5,D9
`Chr2:34359632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796038.1

459 aa

230

459

polyprenyl_synt

PF00348 polyprenyl_synt 126-241 aa PF00348 polyprenyl_synt 271-410 aa

XP_057796039.1

421 aa

210

421

polyprenyl_synt

PF00348 polyprenyl_synt 126-372 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796038.1`	Pfam	`PF00348`	polyprenyl_synt	Domain	126	241	1.4e-71	241.4	Polyprenyl synthetase
`XP_057796038.1`	Pfam	`PF00348`	polyprenyl_synt	Domain	271	410	1.4e-71	241.4	Polyprenyl synthetase
`XP_057796039.1`	Pfam	`PF00348`	polyprenyl_synt	Domain	126	372	1.7e-76	257.5	Polyprenyl synthetase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940056.1
TTCACACACAATGAATGTAGTCCGCTAGATAAGATTCAACGTCTCGTTGTCTTGTCCATTGCTTCTCATTTCCCTCAGCTCTTTTCCAAAAACTTTCAAAAAAAGTCGTAATTTCGTGATTTTTTTGAAAAATAAACAATCCTGTGTGTGCAGAAAAATAAAAATCCAAACTCGAATGCTGTATTTTTTTGCTCCACTCAATTTTTTTTCCTGCTTATGCACAAAACAAAATGAATATGACTCGCAACCAGACTCTCCTC...

XM_057940055.1
TTCTCATTTCCCTCAGCTCTTTTCCAAAAACTTTCAAAAAAAGTCGTAATTTCGTGATTTTTTTGAAAAATAAACAATCCTGTGTGTGCAGAAAAATAAAAATCCAAACTCGAATGCTGTATTTTTTTGCTCCACTCAATTTTTTTTCCTGCTTATGCACAAAACAAAATGAATATGACTCGCAACCAGACTCTCCTCTTCTTTGAGAAACTCCCAAACTCCACAACCCATTAACATTTCGCATTTTCTTTGCCCTTCTT...

CDS

2 records

下载 CDS FASTA

LOC131012140
ATGATGTCGCTGACATGTAGTAATCTTGAGTTTGGTAGAACAAGATGGGATTTTGCGGCGTGCGGCTGCTCTTCCAATGCCTCTACCAATCGTGTAACCGCGAGAAATTGCGGAAAGGGGGTGCTCCAGAATGTGAATAGGCGTGGCGGAGCTCGCAGATTGAGGTGTTGCCGGCGCGACGCCGGCCGCTGCCGCGTCTTCTCCACGAAGACTCCAGAAGCTTTTCTCAATGGGGTTGCTGCTGGGCCTCCTCCAGTTCT...

Protein

2 records

下载 Protein FASTA

XP_057796038.1
MMSLTCSNLEFGRTRWDFAACGCSSNASTNRVTARNCGKGVLQNVNRRGGARRLRCCRRDAGRCRVFSTKTPEAFLNGVAAGPPPVLDLAEEEKGLPSMSNMFEVVAEDLLTLNKNLQSIVGSENPVLMSAAEQIFEAGGKRMRPALVFLVSRATAEIAGLKDLTKEHRRLAEIIEMIHTASLIHDDVIDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVRDTFAPDLLPIINKVDSKEY...

XP_057796039.1
MMSLTCSNLEFGRTRWDFAACGCSSNASTNRVTARNCGKGVLQNVNRRGGARRLRCCRRDAGRCRVFSTKTPEAFLNGVAAGPPPVLDLAEEEKGLPSMSNMFEVVAEDLLTLNKNLQSIVGSENPVLMSAAEQIFEAGGKRMRPALVFLVSRATAEIAGLKDLTKEHRRLAEIIEMIHTASLIHDDVIDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器