当前解析结果
SmilChr02G001924| 统一新 Gene ID | SmilChr02G001924 |
|---|---|
| 名称 | SmilChr02G001924 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 34650134 - 34653116 / + |
| NCBI Gene ID | LOC131012149 |
|---|---|
| GeneID | 131012149 |
| locus_tag | - |
| NCBI Name | LOC131012149 |
| 原始查询 | SmilChr02G001924 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=48.7; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0784700- identity=44.4; qcov=1.01; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012149 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796051.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796051.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796051.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796051.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796051.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:34650380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B32,B87,C33,C74,C8 |
Chr2:34650420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,C54 |
Chr2:34650470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:34650527 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,B105 |
Chr2:34650565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,C67 |
Chr2:34650627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B91 |
Chr2:34650639 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | D2 |
Chr2:34650639 |
TA |
T |
1bp_deletion | CDS_variant | 1 | D2 |
Chr2:34650767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C37 |
Chr2:34650936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,B87 |
Chr2:34650977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:34651080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796051.1PF01453
B_lectin 74-176 aa
PF00954
S_locus_glycop 209-315 aa
PF08276
PAN_2 337-403 aa
PF00069
Pkinase 506-704 aa
PF07714
PK_Tyr_Ser-Thr 507-705 aa
PF11883
DUF3403 777-821 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796051.1 |
Pfam | PF01453 |
B_lectin | Repeat | 74 | 176 | 3.6e-37 | 127.7 | D-mannose binding lectin |
XP_057796051.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 209 | 315 | 9e-20 | 72.0 | S-locus glycoprotein domain |
XP_057796051.1 |
Pfam | PF08276 |
PAN_2 | Domain | 337 | 403 | 4.7e-18 | 65.8 | PAN-like domain |
XP_057796051.1 |
Pfam | PF00069 |
Pkinase | Domain | 506 | 704 | 7.1e-45 | 154.2 | Protein kinase domain |
XP_057796051.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 507 | 705 | 8e-48 | 163.7 | Protein tyrosine and serine/threonine kinase |
XP_057796051.1 |
Pfam | PF11883 |
DUF3403 | Family | 777 | 821 | 1.6e-07 | 32.1 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。