当前解析结果
SmilChr02G001925| 统一新 Gene ID | SmilChr02G001925 |
|---|---|
| 名称 | SmilChr02G001925 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 34667716 - 34670849 / + |
| NCBI Gene ID | LOC131012150 |
|---|---|
| GeneID | 131012150 |
| locus_tag | - |
| NCBI Name | LOC131012150 |
| 原始查询 | SmilChr02G001925 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=49; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0556600- identity=42.8; qcov=1.05; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012150 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796052.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796052.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796052.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796052.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796052.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:34667843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,C74,C8 |
Chr2:34668083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr2:34668284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:34668386 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B40 |
Chr2:34668386 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B40 |
Chr2:34668471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B115,B126,B70 |
Chr2:34668515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:34668667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,B56,B96 |
Chr2:34668830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr2:34668875 |
TA |
T |
1bp_deletion | frameshift_variant | 6 | B131,B30,B55,B56,B96,C37 |
Chr2:34668983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:34669002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B89,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796052.1PF01453
B_lectin 74-176 aa
PF00954
S_locus_glycop 209-315 aa
PF08276
PAN_2 337-403 aa
PF00069
Pkinase 503-701 aa
PF07714
PK_Tyr_Ser-Thr 504-702 aa
PF11883
DUF3403 774-818 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796052.1 |
Pfam | PF01453 |
B_lectin | Repeat | 74 | 176 | 1.6e-37 | 128.9 | D-mannose binding lectin |
XP_057796052.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 209 | 315 | 1.4e-19 | 71.4 | S-locus glycoprotein domain |
XP_057796052.1 |
Pfam | PF08276 |
PAN_2 | Domain | 337 | 403 | 5.6e-17 | 62.3 | PAN-like domain |
XP_057796052.1 |
Pfam | PF00069 |
Pkinase | Domain | 503 | 701 | 8.9e-44 | 150.6 | Protein kinase domain |
XP_057796052.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 504 | 702 | 2.3e-45 | 155.7 | Protein tyrosine and serine/threonine kinase |
XP_057796052.1 |
Pfam | PF11883 |
DUF3403 | Family | 774 | 818 | 1.9e-07 | 31.8 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。